G324580


Basic Information

Item Value
gene id G324580
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 747019 ~ 747564 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU384612
tttttttgttttaaagctgcttttgaGTCGAAAAGGAATCCGATTTCCTGCCTGCTGTTGTTTAATCGAcatcttttatttaatgtttaacaaaGTTTTATGATAAAGGGAGAATATTTCAGAATGAAAGTATTTATTGCTTTAAAGTATTTCGCTGTAAAAGATCAGATTCAGCGTACGCGCCATGTCTTTAATCAGACGTTCGGTTATGAAGAAGATCTCGCGCCTCTAGCTGTCCGCAGAACCGAGGCGTAAATCCTGCCGGCACTCGAGAAACAGAACGCGACAATATTTCTGGTTGAATATCGCGACGTATCGTATAACCGATGATCGGCACACGCCTGCAGGTCTACAGTAACCCTGATCACTTCAAGTCTTGATCCAATAAAATACAACGATGATGACGGAAGAGTGCAGACGCCGAGCGACTCGGACGCACTCGCCAACTTAACgtcaaataaatataatactaagagaaagagagaaagagaaaaaaaaaaaaacaaggtctGAAATGAACTTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384612 True 526 lncRNA 0.40 2 747019 747564

Neighbor

gene id symbol gene type direction distance location
si:ch211-225p5.8 LOC108256244 coding downstream 76184 664062 ~ 670835 (-)
fli1rs LOC108256249,LOC108437389 coding downstream 105512 613922 ~ 641507 (-)
fbl fbl,LOC107737817,LOC107686016,LOC107666874,LOC107719117 coding downstream 134899 606087 ~ 612120 (-)
alkbh8 alkbh8 coding downstream 142004 598396 ~ 605015 (-)
LOC113524795 NA coding downstream 202986 538195 ~ 544033 (-)
scn1ba LOC108256230,LOC108437383 coding upstream 5078 752642 ~ 770973 (-)
mtdhb LOC108256290 coding upstream 73058 820622 ~ 831921 (-)
ubxn11 ubxn11 coding upstream 100271 847835 ~ 856733 (-)
LOC113525074 NA coding upstream 149762 897326 ~ 902262 (-)
si:dkey-11p23.7 siglec15 coding upstream 168355 915919 ~ 919909 (-)
G324571 NA non-coding downstream 33234 713329 ~ 713785 (-)
LOC113524788 NA non-coding downstream 34656 709872 ~ 712363 (-)
G324563 NA non-coding downstream 45761 695222 ~ 701258 (-)
G324584 NA non-coding upstream 33521 781085 ~ 782326 (-)
G324602 NA non-coding upstream 44382 791946 ~ 792487 (-)
G324616 NA non-coding upstream 64775 812339 ~ 814333 (-)
G324622 cep85 non-coding upstream 94702 842266 ~ 842622 (-)
G324649 NA non-coding upstream 133045 880609 ~ 955392 (-)
G324579 NA other downstream 19385 726627 ~ 727634 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 171748 549060 ~ 575271 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other downstream 292196 374199 ~ 454823 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other downstream 350446 350738 ~ 396573 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other downstream 415258 234506 ~ 331761 (-)
nek11 LOC108256279 other upstream 295749 1043313 ~ 1102117 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other upstream 547301 1294865 ~ 1342071 (-)
G324748 NA other upstream 622912 1370476 ~ 1371029 (-)
kif13a kif13a other upstream 655700 1403264 ~ 1451000 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 809452 1557016 ~ 1568506 (-)

Expression


Co-expression Network