scn1ba (LOC108256230,LOC108437383)


Basic Information

Item Value
gene id scn1ba
gene name LOC108256230,LOC108437383
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 752642 ~ 770973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298197.1
ctctctctctctcagtcagtgCTGTATCCTTCCTTCCCTCGCATCATGCCATCCCTCCTCCGTCCGGATCTTTGGAAATGCGCACACTGGCTTCATTCAAGGAAGAAATAAGCgatttagagaaaaataaattactccTGCATTAATAAAGCAACGGATTTTTAAGGGATAAAAAGAGGAGCTTCGgtgggagaaggagagagagagagagagagagagagagagagagagatcctgcGGCTCTGTCCCAAATCCACATGCACAGTGTGCGAGGTAGGCAGCATGAAGCCCTGAAGAACTGAAGGACgcactgcatttatttatttattttttattttttgcaacaCATGCAGTTTTGACTCAGTGATTCAGATGATGGAATGTAGCTTCTGCTGAACTGAatgcataattaataatgtgcactgtagaatttttttttcttctacttgATAAATGATTTCTGATTGAAAGagaagcatttatttttatttttgtgaatcaTCCACGCTTGCACCATATGACCATCTGGCATGAAGGATAACTGAAGCTGCGGAGGTGGaccactgaagaagaagaagaagaagaagaaggggcCTTACTGTAATCTGTGTGACCTGAACACACTATctatactcaaaaaaaaaaaaaagataaggacagattaaatatttatgtccGTCTACGTCCATGCAGATTTCCATGAGCTTAAAATTTAACAATCCTCACACGTCTAGATCTTCATGTAGGTCTCGTCCACTCATCGTCCATTTTCAtagagcaataataataataataaatagtaataataataataataaggtaaGAACTTCACTGGAATGTATCGGCTACGTGAAACCAAAGACgcgtaagaaaaaaaaagttgtgcgATCCACGCTTCCAATCTTCCATTCTCAATCAGTCACTGTGCGACATCTTCTACATCTTCATCAGCTTCATCTTCATCAGCTTCATCTTCGTCATCTTCTCATCTTCTCAGGTCAGTCGGCTTTTCCTCTCTGTCACGCTCGTCATTGCCGATTGCTCGTCTTCCACGCTATGCACTCATCACagactttctctttctcttaaaCATCACAAACCTCAAAAAGTTCAAGTCTTCCATTACAAACAAGGAAAGCTgtgaagtgtaaagtgtaaagattGATTTTTGATCAgagaatttttctttttaaaaaaatagctatGTTATAGATAGGCTAGCAACACAACGCTAACAAAAGAAAGAGTCACATCATCgcgaaaaaaaaatattctggaTTCACAAGCCGAGTGAAGAGCATCGCTGAAGTGAACGCTCCTTTACTGAGTTGTAGTGAACACTTTATGATTGTGGAAACTGAAGGTTGCATTGCTAACAGAAGTAAACAGCTGGGAAGTGAATTAAAGCAACACTTCAGGACCACGTGGAGAAAGTGAACACTGCATTACTAAACACTGAAGAGACTTCCTCTGTGAGGGATCCGGCTCCTTCTGAAATCCACTGCTGCATCgtgggacacacacagagagacccTCTGATCTCCAacagcgcgtgtgtgtgtgtgagagtgtgtgtgagagtgtgtatatgtgtgtgtccctCTCCTGGGTGAAGATGACTGCAGTCCAGGTGATGTGGCtcccgctgctgctgctgtgcatCACACATGCTCGGCTCAGCAGCTCGGCGTGTGTGGAGGTCGACTCGGACACCGAGGCCGTGGCAGGAAAGGATTTCAAGCTGGGCTGCATCTCCTGTAAGATGCGAGGCGAGGTGGACGCCTCGGCCACTGTGGACTGGTGGTTCATGGCGAAAGGAGAGAGCGACTTCACCCACATCTACAGCTACAGCAACATGATGGGCATGGTGACAGACGAACGCTTCACGGGCCGTATCGAGTGGGTGGGCAGTAAAAAGACGTTGGACCTTCAGGATGGATCTCTGAACATCCTCAACGTCACGTACAACGACACGGGGACGTACCGCTGCTACTTCGACCGCACGCTCTCCTTCACCTACTACGAGTTTCGCACCAACACCACCAAATTCATCACCATCAACGTCGTGGCCAAAGagacaCGTGGCATGGCCTCCATCCTGTCGGAGGTGATGATGTACGTGTCCATCATCGGCCTGCAGCTGTGGTTACTGGTGGAGATGGtttactgttacaggaaaatcgCTGCTGCTGGAGAGGAAGCGCTGAGAGAGAGCGcGGCCGAGTATTTAGCCATCACATCTGAGAGTAAAGACAACTGCACCGGCGTGGCTGTGGccgagtaacacacacacacacacacacacaca
>XM_034298198.1
ctctctctctctcagtcagtgCTGTATCCTTCCTTCCCTCGCATCATGCCATCCCTCCTCCGTCCGGATCTTTGGAAATGCGCACACTGGCTTCATTCAAGGAAGAAATAAGCgatttagagaaaaataaattactccTGCATTAATAAAGCAACGGATTTTTAAGGGATAAAAAGAGGAGCTTCGgtgggagaaggagagagagagagagagagagagagagagagagagatcctgcGGCTCTGTCCCAAATCCACATGCACAGTGTGCGAGGTAGGCAGCATGAAGCCCTGAAGAACTGAAGGACgcactgcatttatttatttattttttattttttgcaacaCATGCAGTTTTGACTCAGTGATTCAGATGATGGAATGTAGCTTCTGCTGAACTGAatgcataattaataatgtgcactgtagaatttttttttcttctacttgATAAATGATTTCTGATTGAAAGagaagcatttatttttatttttgtgaatcaTCCACGCTTGCACCATATGACCATCTGGCATGAAGGATAACTGAAGCTGCGGAGGTGGaccactgaagaagaagaagaagaagaagaaggggcCTTACTGTAATCTGTGTGACCTGAACACACTATctatactcaaaaaaaaaaaaaagataaggacagattaaatatttatgtccGTCTACGTCCATGCAGATTTCCATGAGCTTAAAATTTAACAATCCTCACACGTCTAGATCTTCATGTAGGTCTCGTCCACTCATCGTCCATTTTCAtagagcaataataataataataaatagtaataataataataataaggtaaGAACTTCACTGGAATGTATCGGCTACGTGAAACCAAAGACgcgtaagaaaaaaaaagttgtgcgATCCACGCTTCCAATCTTCCATTCTCAATCAGTCACTGTGCGACATCTTCTACATCTTCATCAGCTTCATCTTCATCAGCTTCATCTTCGTCATCTTCTCATCTTCTCAGGTCAGTCGGCTTTTCCTCTCTGTCACGCTCGTCATTGCCGATTGCTCGTCTTCCACGCTATGCACTCATCACagactttctctttctcttaaaCATCACAAACCTCAAAAAGTTCAAGTCTTCCATTACAAACAAGGAAAGCTgtgaagtgtaaagtgtaaagattGATTTTTGATCAgagaatttttctttttaaaaaaatagctatGTTATAGATAGGCTAGCAACACAACGCTAACAAAAGAAAGAGTCACATCATCgcgaaaaaaaaatattctggaTTCACAAGCCGAGTGAAGAGCATCGCTGAAGTGAACGCTCCTTTACTGAGTTGTAGTGAACACTTTATGATTGTGGAAACTGAAGGTTGCATTGCTAACAGAAGTAAACAGCTGGGAAGTGAATTAAAGCAACACTTCAGGACCACGTGGAGAAAGTGAACACTGCATTACTAAACACTGAAGAGACTTCCTCTGTGAGGGATCCGGCTCCTTCTGAAATCCACTGCTGCATCgtgggacacacacagagagacccTCTGATCTCCAacagcgcgtgtgtgtgtgtgagagtgtgtgtgagagtgtgtatatgtgtgtgtccctCTCCTGGGTGAAGATGACTGCAGTCCAGGTGATGTGGCtcccgctgctgctgctgtgcatCACACATGCTCGGCTCAGCAGCTCGGCGTGTGTGGAGGTCGACTCGGACACCGAGGCCGTGGCAGGAAAGGATTTCAAGCTGGGCTGCATCTCCTGTAAGATGCGAGGCGAGGTGGACGCCTCGGCCACTGTGGACTGGTGGTTCATGGCGAAAGGAGAGAGCGACTTCACCCACATCTACAGCTACAGCAACATGATGGGCATGGTGACAGACGAACGCTTCACGGGCCGTATCGAGTGGGTGGGCAGTAAAAAGACGTTGGACCTTCAGGATGGATCTCTGAACATCCTCAACGTCACGTACAACGACACGGGGACGTACCGCTGCTACTTCGACCGCACGCTCTCCTTCACCTACTACGAGTTTCGCACCAACACCACCAAATTCATCACCATCAACGTCGTGGCCAAAGagacaCGTGGCATGGCCTCCATCCTGTCGGAGGTGATGATGTACGTGTCCATCATCGGCCTGCAGCTGTGGTTACTGGTGGAGATGGtttactgttacaggaaaatcgCTGCTGCTGGAGAGGAAGCGCTGAGAGAGAGCGcGGCCGAGTATTTAGCCATCACATCTGAGAGTAAAGACAACTGCACCGGCGTGGCTGTGGccgagtaacacacacacacacacacaCAGGACCATAAAAACTCTGAAACTTCACCATGATG
>XM_034298199.1
ctctctctctctctcagtcagtgCTGTATCCTTCCTTCCCTCGCATCATGCCATCCCTCCTCCGTCCGGATCTTTGGAAATGCGCACACTGGCTTCATTCAAGGAAGAAATAAGCgatttagagaaaaataaattactccTGCATTAATAAAGCAACGGATTTTTAAGGGATAAAAAGAGGAGCTTCGgtgggagaaggagagagagagagagagagagagagagagagagagatcctgcGGCTCTGTCCCAAATCCACATGCACAGTGTGCGAGGTAGGCAGCATGAAGCCCTGAAGAACTGAAGGACgcactgcatttatttatttattttttattttttgcaacaCATGCAGTTTTGACTCAGTGATTCAGATGATGGAATGTAGCTTCTGCTGAACTGAatgcataattaataatgtgcactgtagaatttttttttcttctacttgATAAATGATTTCTGATTGAAAGagaagcatttatttttatttttgtgaatcaTCCACGCTTGCACCATATGACCATCTGGCATGAAGGATAACTGAAGCTGCGGAGGTGGaccactgaagaagaagaagaagaagaagaaggggcCTTACTGTAATCTGTGTGACCTGAACACACTATctatactcaaaaaaaaaaaaaagataaggacagattaaatatttatgtccGTCTACGTCCATGCAGATTTCCATGAGCTTAAAATTTAACAATCCTCACACGTCTAGATCTTCATGTAGGTCTCGTCCACTCATCGTCCATTTTCAtagagcaataataataataataaatagtaataataataataataaggtaaGAACTTCACTGGAATGTATCGGCTACGTGAAACCAAAGACgcgtaagaaaaaaaaagttgtgcgATCCACGCTTCCAATCTTCCATTCTCAATCAGTCACTGTGCGACATCTTCTACATCTTCATCAGCTTCATCTTCATCAGCTTCATCTTCGTCATCTTCTCATCTTCTCAGGTCAGTCGGCTTTTCCTCTCTGTCACGCTCGTCATTGCCGATTGCTCGTCTTCCACGCTATGCACTCATCACagactttctctttctcttaaaCATCACAAACCTCAAAAAGTTCAAGTCTTCCATTACAAACAAGGAAAGCTgtgaagtgtaaagtgtaaagattGATTTTTGATCAgagaatttttctttttaaaaaaatagctatGTTATAGATAGGCTAGCAACACAACGCTAACAAAAGAAAGAGTCACATCATCgcgaaaaaaaaatattctggaTTCACAAGCCGAGTGAAGAGCATCGCTGAAGTGAACGCTCCTTTACTGAGTTGTAGTGAACACTTTATGATTGTGGAAACTGAAGGTTGCATTGCTAACAGAAGTAAACAGCTGGGAAGTGAATTAAAGCAACACTTCAGGACCACGTGGAGAAAGTGAACACTGCATTACTAAACACTGAAGAGACTTCCTCTGTGAGGGATCCGGCTCCTTCTGAAATCCACTGCTGCATCgtgggacacacacagagagacccTCTGATCTCCAacagcgcgtgtgtgtgtgtgagagtgtgtgtgagagtgtgtatatgtgtgtgtccctCTCCTGGGTGAAGATGACTGCAGTCCAGGTGATGTGGCtcccgctgctgctgctgtgcatCACACATGAACCAAACGCCCCTCCAGAGGTCAGAGGTTGAAGGTAGCACACTCGGAGATGCAGCTCGGCTCAGCAGCTCGGCGTGTGTGGAGGTCGACTCGGACACCGAGGCCGTGGCAGGAAAGGATTTCAAGCTGGGCTGCATCTCCTGTAAGATGCGAGGCGAGGTGGACGCCTCGGCCACTGTGGACTGGTGGTTCATGGCGAAAGGAGAGAGCGACTTCACCCACATCTACAGCTACAGCAACATGATGGGCATGGTGACAGACGAACGCTTCACGGGCCGTATCGAGTGGGTGGGCAGTAAAAAGACGTTGGACCTTCAGGATGGATCTCTGAACATCCTCAACGTCACGTACAACGACACGGGGACGTACCGCTGCTACTTCGACCGCACGCTCTCCTTCACCTACTACGAGTTTCGCACCAACACCACCAAATTCATCACCATCAACGTCGTGGCCAAAGagacaCGTGGCATGGCCTCCATCCTGTCGGAGGTGATGATGTACGTGTCCATCATCGGCCTGCAGCTGTGGTTACTGGTGGAGATGGtttactgttacaggaaaatcgCTGCTGCTGGAGAGGAAGCGCTGAGAGAGAGCGcGGCCGAGTATTTAGCCATCACATCTGAGAGTAAAGACAACTGCACCGGCGTGGCTGTGGccgagtaacacacacacacacacaca

Function

NR:

description
PREDICTED: sodium channel subunit beta-1-like

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0017080 sodium channel regulator activity molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298197.1 False 2308 mRNA 0.45 5 753237 770971
XM_034298198.1 False 2337 mRNA 0.45 6 752642 770971
XM_034298199.1 True 2359 mRNA 0.46 6 753243 770973

Neighbor

gene id symbol gene type direction distance location
si:ch211-225p5.8 LOC108256244 coding downstream 81807 664062 ~ 670835 (-)
fli1rs LOC108256249,LOC108437389 coding downstream 111135 613922 ~ 641507 (-)
fbl fbl,LOC107737817,LOC107686016,LOC107666874,LOC107719117 coding downstream 140522 606087 ~ 612120 (-)
alkbh8 alkbh8 coding downstream 147627 598396 ~ 605015 (-)
LOC113524795 NA coding downstream 208609 538195 ~ 544033 (-)
mtdhb LOC108256290 coding upstream 49649 820622 ~ 831921 (-)
ubxn11 ubxn11 coding upstream 76862 847835 ~ 856733 (-)
LOC113525074 NA coding upstream 126353 897326 ~ 902262 (-)
si:dkey-11p23.7 siglec15 coding upstream 144946 915919 ~ 919909 (-)
LOC117595783 LOC108256266,LOC108256277,LOC108256270,LOC108256272,LOC108256276,LOC108261760,LOC108261539 coding upstream 354931 1125904 ~ 1234282 (-)
G324581 NA non-coding downstream 4141 727811 ~ 748501 (-)
G324580 NA non-coding downstream 5078 747019 ~ 747564 (-)
G324571 NA non-coding downstream 38857 713329 ~ 713785 (-)
LOC113524788 NA non-coding downstream 40279 709872 ~ 712363 (-)
G324563 NA non-coding downstream 51384 695222 ~ 701258 (-)
G324584 NA non-coding upstream 10112 781085 ~ 782326 (-)
G324602 NA non-coding upstream 20973 791946 ~ 792487 (-)
G324616 NA non-coding upstream 41366 812339 ~ 814333 (-)
G324622 cep85 non-coding upstream 71293 842266 ~ 842622 (-)
G324649 NA non-coding upstream 109636 880609 ~ 955392 (-)
G324579 NA other downstream 25008 726627 ~ 727634 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 177371 549060 ~ 575271 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other downstream 297819 374199 ~ 454823 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other downstream 356069 350738 ~ 396573 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other downstream 420881 234506 ~ 331761 (-)
nek11 LOC108256279 other upstream 272340 1043313 ~ 1102117 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other upstream 523892 1294865 ~ 1342071 (-)
G324748 NA other upstream 599503 1370476 ~ 1371029 (-)
kif13a kif13a other upstream 632291 1403264 ~ 1451000 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 786043 1557016 ~ 1568506 (-)

Expression


Co-expression Network