G326995


Basic Information

Item Value
gene id G326995
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5314207 ~ 5314655 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU387478
gcccatgtaaaaaaaaaaaaaatgagaagaaataacacaaatcacaacaatgtttttaatgttttcaacCTGTTGCAAAAATAATAGCATTATCCTTAGCCCTTACAGTAActattacactgttaaaattcAGAACCACAACAGATAATTAGTGTAACATTAACAATAACTGTTTAATCTATCTGAGCAATATCATATCCACTATTTTTGGGCTCACATGTAAATCTAATCCAGTGATAAAAATTCATCACATTCCATATTTATTGATGACTTCCTTGGCCAGGGTGATGTAGGCAGTCATGGCATCTTCTGTGGACATGCCTGTTAAATAAAAGGTAAAGGATTTAACATTTCAGAGCAAATTTTCCAAAGCAGTCATGTAGTAGGCTAAGCGTTTACCCGATACTTATTCAGCTGccacgcaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU387478 True 429 lncRNA 0.33 2 5314207 5314655

Neighbor

gene id symbol gene type direction distance location
rpp38 rpp38 coding downstream 5103 5307441 ~ 5309104 (-)
si:dkey-65b12.6 LOC108256587 coding downstream 97907 5205561 ~ 5216300 (-)
LOC117595762 NA coding downstream 135189 5178282 ~ 5179018 (-)
LOC117595761 NA coding downstream 145581 5167096 ~ 5168626 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 217021 5085898 ~ 5097186 (-)
abcb4 abcb1,abcb4,LOC107549227,LOC107738866,LOC107689873 coding upstream 17474 5332129 ~ 5349833 (-)
slc25a40 slc25a40,LOC107666862,LOC107592430 coding upstream 76762 5391417 ~ 5400856 (-)
cldn12 cldn12 coding upstream 143578 5458233 ~ 5463036 (-)
washc5 kiaa0196,strumpellin coding upstream 178574 5493229 ~ 5512596 (-)
LOC113532914 LOC108256385,LOC108440755,LOC103044808 coding upstream 200187 5514842 ~ 5522545 (-)
G326989 NA non-coding downstream 3942 5310049 ~ 5310265 (-)
G326981 NA non-coding downstream 18975 5294732 ~ 5295232 (-)
G326960 NA non-coding downstream 56931 5257051 ~ 5257276 (-)
G326958 NA non-coding downstream 58196 5255795 ~ 5256011 (-)
G326945 NA non-coding downstream 114801 5198223 ~ 5199406 (-)
G327100 NA non-coding upstream 77567 5392222 ~ 5393582 (-)
G327362 NA non-coding upstream 423882 5738537 ~ 5739588 (-)
G327505 NA non-coding upstream 521415 5836070 ~ 5836306 (-)
G327507 NA non-coding upstream 522834 5837489 ~ 5837782 (-)
G327508 NA non-coding upstream 523228 5837883 ~ 5838277 (-)
ubr5 ubr5 other downstream 336680 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 966954 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1348092 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1517839 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1909789 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 514819 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 941748 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 1742139 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 2064076 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4836842 10151497 ~ 10156800 (-)

Expression


Co-expression Network