G356331


Basic Information

Item Value
gene id G356331
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 16139789 ~ 16140270 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU422114
cccgaggtggtggagctcatatggcgtatgttcggcagagcccaggtggatctgtttgcgacgcaggagacgtcgcactgtcccctttggttctctctgattcatccagctcctcttggactggatgccatggtacagccgtggccgaggctgcgtctgtacgcctttcctccggtcgctctgctcccgggagttctggagagagtgcgccgggacggaattcgtctactgttagtagccccgttctggccgggccgagtatggttctcggacctgatttccctcctagacggctccccatgggagattccgatcaggagggatctcctctcacaggcggggggccatcttcacccccgcccggagctgtggaagctgtgggtgtggcctctgagggggcacaactccgcgcttccggtctctcaaccgaggttgtggagaccatcctccagtccagagctccctctacgaggaaactgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422114 True 482 TUCP 0.61 1 16139789 16140270

Neighbor

gene id symbol gene type direction distance location
scarf2 scarf2 coding downstream 255163 15847571 ~ 15884626 (-)
zgc:112294 LOC108255850 coding downstream 306856 15829307 ~ 15832933 (-)
fbxo21 fbxo21,LOC107726726,LOC102799747 coding downstream 471471 15656656 ~ 15668318 (-)
tesca tesc coding downstream 487126 15644594 ~ 15652663 (-)
rfc5 rfc5,LOC107668751,LOC107716544,LOC107704514 coding downstream 793994 15337484 ~ 15345795 (-)
hscb hscb coding upstream 244588 16384858 ~ 16392530 (-)
imp4 imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341 coding upstream 252523 16392793 ~ 16403387 (-)
tcn2 LOC108255816 coding upstream 303754 16444024 ~ 16452823 (-)
LOC117595990 LOC108255971 coding upstream 338671 16478941 ~ 16486378 (-)
htr7c htr7c,LOC108255340,LOC107656814,LOC103024570,LOC107707833,LOC107560967,LOC107561270,LOC103141401,LOC107087862 coding upstream 418753 16559023 ~ 16603967 (-)
G356211 NA non-coding downstream 225454 15913865 ~ 15914335 (-)
G356142 NA non-coding downstream 337849 15801785 ~ 15801940 (-)
G356143 NA non-coding downstream 339670 15799549 ~ 15800119 (-)
G355916 NA non-coding downstream 616326 15520075 ~ 15523463 (-)
G355848 NA non-coding downstream 759114 15324487 ~ 15380675 (-)
G356439 NA non-coding upstream 353778 16494048 ~ 16495690 (-)
G356493 NA non-coding upstream 492990 16633260 ~ 16633749 (-)
G356621 NA non-coding upstream 548898 16689168 ~ 16753962 (-)
G356693 NA non-coding upstream 670908 16811178 ~ 16816843 (-)
G356716 NA non-coding upstream 793249 16933519 ~ 16980957 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other downstream 298105 15833053 ~ 15841684 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other downstream 550298 15580470 ~ 15589491 (-)
ccl19a.2 NA other downstream 1215130 14908796 ~ 14924659 (-)
mrpl41 mrpl41 other downstream 2414931 13722105 ~ 13724858 (-)
LOC113536823 NA other downstream 5390951 10731527 ~ 10748838 (-)
rabl6b rabl6,rabl6b,LOC108435365 other upstream 274419 16414689 ~ 16442957 (-)
si:ch211-102c2.8 LOC108255971 other upstream 324157 16464427 ~ 16478840 (-)
suds3 suds3,LOC102779790 other upstream 1019678 17159948 ~ 17175726 (-)
G357624 ewsr1,LOC108255470,LOC107592307,LOC107672746 other upstream 2706280 18846550 ~ 19188128 (-)
atad1a LOC108255958,LOC107561272,LOC108414574,LOC103365845 other upstream 2945393 19085663 ~ 19100217 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G130077 NA unknown NC_056717.1 CM032086.1 3093067 ~ 3093714 (+)