si:ch211-102c2.8 (LOC108255971)


Basic Information

Item Value
gene id si:ch211-102c2.8
gene name LOC108255971
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 16464427 ~ 16478840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU422235
AAAGACACTACATGTATGGGCCATGGAAGCATTATGATAAATTATACTGCAAGATATACTGCAAGATAATGGCATTGCCtaaatgtacaataaaaaaaaaaacagctcatgTATGCGAGTCGGCTCCCAAAGTTccaaagagtcgactcgttaGAAGAGGAAACATCACTACTGTGTTACTCTTTCTCATATCGATCAGCAACACCAGCTGATTGCAGCCGTCTCGGAGCTCATGTATATTGAAGAGGGCAGTTAGAGTCACAGCGGATTGAAAAGATGgtcatgtcttggaggaagcacggCTTAGTCCTCAATCTCGCAGGTTAATATCTGTCATGTGATAGAGAACTGGCTTATGAGTGCGAATCAGTAATGATAAAATGGAGTAAAAATTccaaaatatatgaataatatataaattaataaataaataatttaaatttcacTGCTGC
>XM_034299379.1
ATGTCCCTACAAGACCTGGCCTGCTGTGATCTGATCCCCATAAATACGTCCTTTAATGGAGTTTGGGAGAAaGCAGCTGTACAGGGAGTGGAGAGATTGAGGGAGGAGGTCGAGCAGGCTGAGAAagagcaacacacactgcttcttAGTGTGACTCACACCaggacacacactcagctccTCAGgagtGAGCTGCACAAACTCCAATCTCAGAGGGACTTGTACATTCaggaggtcagggctctgcaGGAGAGCCAGGCTGCCCTGCAGAGACACATAACCACTGTTCACCATGACACCAGCCCTCaaaagCATGTGAATAGCGGCTGTGTGTCTGCGCTGGAGAGGGAGGAGATGGATCGGCTTTTGGACAACGCCAAATCAGAGCTGTTCTCCGAGCAGCGGCGCTTCAGACGCACACTGGACTCCATGCAAGAGagattGGAGGAAGTGACCCAGGAGCTGGAGCAGAAGCAGGAGGAGAACAGGAAGCTCAGAGAGAAATGCTCCCAGCTGGAGGAGAAGCTGATCACAGCCACCAAAACAAGACAAGAGCTACAGGAATCTTCACAGAGCGAACGAGTGGAGCAGGAAGGCCGGCTTGGGGCTCTCGAGAAGATCATTGCACAGAAGGAGCTGCTTCTCCTGGCCACGCAAGAGGAGAAGAATCGCCTCGAGATGGAGATCAGGGCTGTCAGAGAGGAGGACAGTGCTAAGCTAACAGCAGCGCTGGCACACGCTCAGAAACAAAAGGAAGTGGAAGTGGAGCAGCTCAGGACTCAGATGACTCTGACCCACACGGAAGAGTTACACCggGTCCGTATTCAGGTGCATGAGATAAAAGAGGCCGCGCTCAGAGAGCAAgccgtcacacacacacgccactcTGAGTCCTTACACAACCGCAtccagATGGCAGAGGAAGAGGTGAACAGACTACAGGAGTCTttaaagcagcagcaggaggaactcagcaggagagaagaggagctGAGAGGAGAAACTCAAGAACAGGTGAAGAGGGCAGTGGAACGAGAACAGAGGAAGTGGGAGGAGCAGAGGGCGGAGTCTCTCCGAGAGCAGCAGGTCAGACTGGAGAAGCAGATGCAGGAggtggagaggagagggagagcggaggtggagagagaaaaaaggagtgCACTGGCTCTGCAGAATAAAGTGGTGGAGCTGCAGAAGacaGTGGAGGAGTTGGACAGCGCAGCGGCTAAGCAGACGGCTGTGGTCAGAGCTCTGAGAGACGAGCACCAGACAGAGTTATATAAATTGCGCAGACAGCTGCAGCAGGAGGCTGAAAGTGAAGCCATGCgtctgaaagagtgtgtgaagcGGAGCGAGCAGGAGCTGCAGGGCGTGAGGGCAGAGCTGGCTGAGTGTGAGCGTCTCCAGCAGGGGGCGGCGGCGAGACACGAACAGCAGAGCGCCAGCTGGGCTCAGGATAtacacactgagtgtgtgtgtctgcaggagCTGCTCACTCATAACGGCTGCACAGTGGACAACACACATGTCTCACACAGtgttACAGTGAGTGAGGCGGTGCAGGTGCTGCAGTCTCTCAGGAAGTCGCTCCAACACCTCATCACCAGCCTGCAGAATCACATCACCTCACTGACACATGCCAAACAACAGCTGAGTGCTGATAAAgaggaGGAACGGCGTGTGCAGAGGGAGCAGTTAACAGCTGAGAAGGAGAGAGCTGTAAATGCGTTGAGAGAAAAACTTATACAGGAGCACATTGAGGAGCTGAGCAGTTTGAATAGGGTGCGTCTGCGTGAGGATGATGACGGTGACGGCGTGGCTGCGCGTCTGCGCAGGCAGCTCCGGGCTAAAGATGAAGAGCTGCGTCAGGTGCAGAGGAACATGGTGCAGTGGAAGGAGAAAACCACGGCACGGCTCGCACGCAAGTTCGAACAGGAGCTCATGTCTGAGCTGGAGAGGAAAGCCTGCAGACAGAAATCAGAGCAGCGTCGGAGGCTGGAGCAGCTCGAGGGAGAGATGAGACACCTGACTGCGAGCTCCACTGAGATCGTCCCAGCATCCTCTGCTTCCTCAGCTCACATCCCAGACACAGCCAGTAGCCAGGACCTGGACTCATACAAACTACTGCACCACCTCCAGAGCCGCATCCGGCAGCTGCAGGCTGACACccagagccacacacacacctacacacccaGCGCTGTGCGTCTAAACCGGGACAGGGACCGGGGGAACACCGAGCTGTCTGGATCCTACCTCGAGACAaTTGCTCCAGCGCTGGACAGCTGTGTGACACGACAGCGCTCTGATTTGAGAACAGCCTGGAACCCTGACCCTTGAACTCTGACCACTGATCATATCCTTTTTACTGAAGTGTCATGCTGAGAACATTATAAAGACCATCGCCAATGATTTTACACCTTTCCATTTCTGTGCACCAGTGCTGCAGTCTTCAAGGAAAAGTTCATGTGCAGTAAAATCGATAAATCGTACTCAAGGGATCCCAAGTGATGCACACATGACCGAGATTCCAGCCCTGCGTCTCAATTCACCtacttatactatgcactaaaagtatgaACACtaattgtgaagaaaaagtacatacttttgagtgtgtagcaaaagagaATGCAGGTAATGGGACAtatttacacctctctaaaatACGTCCTTGAATTCAGCGAAGCAAAcagtcacaaaactcctcctccctccctcgtGCAAGGAGTTGTGGGTAATGTTAGCTGAAAGAGAGTCCAAGGAACCATACTTCGAAAATCTACCGGAAATAGTAGAGCATCCGGGTACCtttgggatactcatttcaacatactatGATTTGGGACGCACTAAATCTAATATCGGAGACTATTTAGGATGTATAGTATACGAATTAAGACGCCAGCACAAGAGAGCGTAACTGGCCTTGTgggatggctttttttttttttttttgattcagCCTACCAGTAAGAGTCAACTCTTTCGGCATTCAAACGGCTTGTTGCCATTTTTATCTAAAATTATAGTAAAATCAGAAAGACACTACATGTATGGGCCATGGAAGCATTATGATAAATTATACTGCAAGATATACTGCAAGATAATGGCATTGCCtaaatgtacaataaaaaaaaaaacagctcatgTATGCGAGTCGGCTCCCAAAGTTccaaagagtcgactcgttaGAAGAGGAAACATCACTACTGTGTTACTCTTTCTCATATCGATCAGCAACACCAGCTGATTGCAGCCGTCTCGGAGCTCATGTATATTGAAGAGGGCAGTTAGAGTCACAGCGGATTGAAAAGATGgtcatgtcttggaggaagcacggCTTAGTCCTCAATCTCGCAGGTTAATATCTGTCATGTGATAGAGAACTGGCTTATGAGTGCGAATCAGTAATGATAAAATGGAGTAAAAATTccaaaatatatgaataatatataaattaataaataaataatttaaa

Function

NR:

description
PREDICTED: trichohyalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422235 False 452 lncRNA 0.37 1 16464427 16464878
XM_034299379.1 True 3481 mRNA 0.50 19 16464439 16478840

Neighbor

gene id symbol gene type direction distance location
tcn2 LOC108255816 coding downstream 11604 16444024 ~ 16452823 (-)
imp4 imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341 coding downstream 61040 16392793 ~ 16403387 (-)
hscb hscb coding downstream 71897 16384858 ~ 16392530 (-)
scarf2 scarf2 coding downstream 579801 15847571 ~ 15884626 (-)
zgc:112294 LOC108255850 coding downstream 631494 15829307 ~ 15832933 (-)
LOC117595990 LOC108255971 coding upstream 101 16478941 ~ 16486378 (-)
htr7c htr7c,LOC108255340,LOC107656814,LOC103024570,LOC107707833,LOC107560967,LOC107561270,LOC103141401,LOC107087862 coding upstream 80183 16559023 ~ 16603967 (-)
znrf3 znrf3 coding upstream 355971 16834811 ~ 16906162 (-)
LOC113536881 ccdc60 coding upstream 476274 16955114 ~ 16980226 (-)
hspb8 hspb8 coding upstream 507530 16986370 ~ 16997482 (-)
G356211 NA non-coding downstream 550092 15913865 ~ 15914335 (-)
G356142 NA non-coding downstream 662487 15801785 ~ 15801940 (-)
G356143 NA non-coding downstream 664308 15799549 ~ 15800119 (-)
G355916 NA non-coding downstream 940964 15520075 ~ 15523463 (-)
G355848 NA non-coding downstream 1083752 15324487 ~ 15380675 (-)
G356439 NA non-coding upstream 15208 16494048 ~ 16495690 (-)
G356493 NA non-coding upstream 154420 16633260 ~ 16633749 (-)
G356621 NA non-coding upstream 210328 16689168 ~ 16753962 (-)
G356693 NA non-coding upstream 332338 16811178 ~ 16816843 (-)
G356716 NA non-coding upstream 454679 16933519 ~ 16980957 (-)
rabl6b rabl6,rabl6b,LOC108435365 other downstream 21470 16414689 ~ 16442957 (-)
G356331 NA other downstream 324157 16139789 ~ 16140270 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other downstream 622743 15833053 ~ 15841684 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other downstream 874936 15580470 ~ 15589491 (-)
ccl19a.2 NA other downstream 1539768 14908796 ~ 14924659 (-)
suds3 suds3,LOC102779790 other upstream 681108 17159948 ~ 17175726 (-)
G357624 ewsr1,LOC108255470,LOC107592307,LOC107672746 other upstream 2367710 18846550 ~ 19188128 (-)
atad1a LOC108255958,LOC107561272,LOC108414574,LOC103365845 other upstream 2606823 19085663 ~ 19100217 (-)
LOC113524953 galnt9,LOC108412666,LOC103023100,LOC105354775,LOC103141400,LOC106920899 other upstream 2711929 19190769 ~ 19205503 (-)
G358034 NA other upstream 3129666 19608506 ~ 19610045 (-)

Expression


Co-expression Network