G356716


Basic Information

Item Value
gene id G356716
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 16933519 ~ 16980957 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU422571
ctgctttttttttttttttttttttaaatgtcttacgctcaatctggcaaccctggttaagaGGATCCAAGGGTTAGTCAAATATCGATCGAAAAAAACCATCAATCCTCTTTTATGCATGGTAGCATCTTTACACATTTCACTCCCTAGACGATGATATAGACTAGAAATgactgcaaaaataaagaatatgtGGGAAATATGTGGGAAAAAACAATTCCATCTGTTGTCTTTATTATATACAAATCcgtccaatctggcaaccctgatgtCGAAACCTACGATTTCGCCATCCATCAGTGGATACAGCgcgatttattgatttataacGCCCTCAAATACAGCCTAGATCATAGCAAAGGCTAAAGTAGTGCTTTTTAAAAGCGTTAATACGGCGTTCTCACCTCCGAAGTGCTTTTTCCTCAGGACTCAGATGTGTGAGTCTTTGCCTTTTCCGTAAAGGAGGAGCGGCGCCATTACAGTCACCGGAgtgtgaagatgaagaagaaatgaGAAGCACTTTATGGGCTCCTCCAGGCCCTGCTGCCACAACAAccatcgtgtgtgtgttttcggaACCTTAAAGACCcgattaaatgtattattttgaaaggaggaaaagagatTTAAAGCAAATCTCCTCGACTCCTTTGCTGCTCCTCTTCCTGC
>TU422572
ttgttttttttgtttttttttttcttttttttttttttttaaatgtcttacgctcaatctggcaaccctggttaagaGGATCCAAGGGTTAGTCAAATATCGATCGAAAAAAACCATCAATCCTCTTTTATGCATGGTAGCATCTTTACACATTTCACTCCCTAGACGATGATATAGACTAGAAATgactgcaaaaataaagaatatgtGGGAAATATGTGGGAAAAAACAATTCCATCTGTTGTCTTTATTATATACAAATCcgtccaatctggcaaccctgatgtCGAAACCTACGATTTCGCCATCCATCAGTGGATACAGCgcgatttattgatttataacGCCCTCAAATACAGCCTAGATCATAGCAAAGGCTAAAGTAGTGCTTTTTAAAAGCGTTAATACGGCGTTCTCACCTCCGAAGTGCTTTTTCCTCAGGACTCAGATGTGTGAGTCTTTGCCTTTTCCGTAAAGGAGGAGCGGCGCCATTACAGTCACCGGAgtgtgaagatgaagaagaaatgaGAAGCACTTTATGGGCTCCTCCAGGCCCTGCTGCCACAACAAccatcgtgtgtgtgttttcggaACCTTAAAGACCcgattaaatgtattattttgaaaggaggaaaagagatTTAAAGCAAATCTCCTCGACTCCTTTGCTGCTCCTCTTCCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422571 False 669 lncRNA 0.41 2 16933519 16980957
TU422572 True 684 lncRNA 0.40 2 16933519 16949586

Neighbor

gene id symbol gene type direction distance location
znrf3 znrf3 coding downstream 27357 16834811 ~ 16906162 (-)
htr7c htr7c,LOC108255340,LOC107656814,LOC103024570,LOC107707833,LOC107560967,LOC107561270,LOC103141401,LOC107087862 coding downstream 329552 16559023 ~ 16603967 (-)
LOC117595990 LOC108255971 coding downstream 447141 16478941 ~ 16486378 (-)
tcn2 LOC108255816 coding downstream 480696 16444024 ~ 16452823 (-)
imp4 imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341 coding downstream 530132 16392793 ~ 16403387 (-)
hspb8 hspb8 coding upstream 5413 16986370 ~ 16997482 (-)
srrm4 srrm4 coding upstream 25145 17006102 ~ 17073503 (-)
pebp1 pebp1,LOC102778655 coding upstream 258076 17239033 ~ 17244168 (-)
tbx1 tbx1,LOC107755862 coding upstream 343427 17324384 ~ 17337001 (-)
hk2 hk2,LOC108411364,LOC107668748,LOC106585103,LOC107755855 coding upstream 1027214 18008171 ~ 18058819 (-)
G356693 NA non-coding downstream 116676 16811178 ~ 16816843 (-)
G356621 NA non-coding downstream 179557 16689168 ~ 16753962 (-)
G356493 NA non-coding downstream 299770 16633260 ~ 16633749 (-)
G356439 NA non-coding downstream 437829 16494048 ~ 16495690 (-)
G356211 NA non-coding downstream 1019184 15913865 ~ 15914335 (-)
G356899 NA non-coding upstream 484103 17465060 ~ 17465264 (-)
LOC117595943 NA non-coding upstream 522749 17503706 ~ 17543169 (-)
G356992 NA non-coding upstream 721749 17702706 ~ 17766605 (-)
G357069 NA non-coding upstream 789307 17770264 ~ 17771060 (-)
G357060 NA non-coding upstream 817565 17798522 ~ 17868160 (-)
si:ch211-102c2.8 LOC108255971 other downstream 454679 16464427 ~ 16478840 (-)
rabl6b rabl6,rabl6b,LOC108435365 other downstream 490562 16414689 ~ 16442957 (-)
G356331 NA other downstream 793249 16139789 ~ 16140270 (-)
selenoe LOC108255849,LOC100703742,LOC101466006,LOC102210357 other downstream 1091835 15833053 ~ 15841684 (-)
spring1 c22h12orf49,c21h12orf49,zgc:110063,clg12h12orf49,LOC104923683,LOC103134957 other downstream 1344028 15580470 ~ 15589491 (-)
suds3 suds3,LOC102779790 other upstream 178991 17159948 ~ 17175726 (-)
G357624 ewsr1,LOC108255470,LOC107592307,LOC107672746 other upstream 1865593 18846550 ~ 19188128 (-)
atad1a LOC108255958,LOC107561272,LOC108414574,LOC103365845 other upstream 2104706 19085663 ~ 19100217 (-)
LOC113524953 galnt9,LOC108412666,LOC103023100,LOC105354775,LOC103141400,LOC106920899 other upstream 2209812 19190769 ~ 19205503 (-)
G358034 NA other upstream 2627549 19608506 ~ 19610045 (-)

Expression


Co-expression Network