Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113525132 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047619.1 |
| NCBI id | CM018565.1 |
| chromosome length | 19570078 |
| location | 273454 ~ 274623 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU424539 | True | 509 | lncRNA | 0.42 | 3 | 273454 | 274623 |
| XR_003402628.2 | False | 391 | lncRNA | 0.46 | 3 | 273464 | 274515 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113525130 | NA | coding | downstream | 25050 | 299673 ~ 306763 (+) |
| plekhf1 | plekhf1 | coding | downstream | 45913 | 320536 ~ 323330 (+) |
| si:ch211-260e23.9 | LOC108259284 | coding | downstream | 56364 | 330987 ~ 338641 (+) |
| nae1 | nae1,LOC107562208 | coding | downstream | 88262 | 362885 ~ 376246 (+) |
| dync1li2 | dync1li2,LOC107562216,LOC106561980 | coding | downstream | 131356 | 405979 ~ 420868 (+) |
| G358305 | NA | non-coding | upstream | 93304 | 179938 ~ 180150 (+) |
| G358304 | NA | non-coding | upstream | 94140 | 179026 ~ 179314 (+) |
| G358289 | NA | non-coding | upstream | 135123 | 135381 ~ 138331 (+) |
| G358290 | LOC105905159,LOC107565776,LOC108264773,LOC107741896,LOC108412826,LOC105889141 | non-coding | upstream | 138893 | 133431 ~ 134561 (+) |
| G358286 | NA | non-coding | upstream | 207527 | 65658 ~ 65927 (+) |
| G358312 | NA | non-coding | downstream | 9620 | 284243 ~ 286527 (+) |
| G358331 | NA | non-coding | downstream | 64200 | 338823 ~ 436472 (+) |
| G358344 | NA | non-coding | downstream | 104607 | 379230 ~ 424643 (+) |
| G358338 | NA | non-coding | downstream | 116710 | 391333 ~ 394621 (+) |
| LOC117596071 | NA | non-coding | downstream | 124724 | 399347 ~ 400856 (+) |
| ccne1 | ccne1 | other | downstream | 69439 | 344062 ~ 351769 (+) |
| cmtm4 | cmtm4 | other | downstream | 152250 | 426873 ~ 452014 (+) |
| c25h16orf87 | c27h16orf87,cunh16orf87,clg02h16orf87,cssa11h16orf87,LOC103043940,LOC106587296 | other | downstream | 2046501 | 2321124 ~ 2386730 (+) |
| igdcc4 | LOC108259659 | other | downstream | 2361666 | 2636289 ~ 2694287 (+) |
| cilp | cilp,LOC107670750,LOC107750479,LOC107554910 | other | downstream | 2511004 | 2785627 ~ 2823338 (+) |
