mfng (LOC108259517)


Basic Information

Item Value
gene id mfng
gene name LOC108259517
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 19213078 ~ 19235186 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU436383
gtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgagggttgATGCTCTTCTACGTGAAGACAGATAACGGACTCGAGTTTCTGATCTCGATTTACAAGACTTTCGGTTTATTTCTCCACACTGCAGAGGAGTGAAGGGGAGTAGAGAGGGATAAAGAGGAGTAAAGGGGAGTAGAGAGGGATAAAGAGGAGTAAAGAGGAGTGAAGAGGAGTGAAGAGGAGTGAAGCTGGATACCGGAGCAGCTCTTCAGCGCGATGGAGTTCCGTTCTGAGCTCCACACTGAGCGCGCGCGTTTAAACGCGGTGAGATGAAGCTGCTCGCGCGCtgtgatggagagaggaaaTGGTGATTAAGGGGAAGTGATGACTGACAGCACAGGAAGTAGAATGCGCGTTATGGACTGCTGGTGTAAAGGTTCAGCTTTTAGATGCTTTAATCTGGATGATGTGTGAAGCAGCTCCACCGCGCGCGcacttcattttcttcttcttctttttcatttccctCTTTGATCTCGCGCGCCAccgccactttttttttaaaagtacttCTTTATGatgaaagtttttttgttaTGAAATTATAAAGAACAGTTATGAAATAAACCCCTTTATTTAGAAATGCTCGTGAGATGGAAGCCGAGCCGCGCGGTGCCGGTGGCCGCGCTCGCGCTCCTCTTCATCATCGCCTTTGTGCACTCGCGCCTGCGGAACGGAAAAGTGAGCGCGCGCGTGGACAAgccatcttcatcctcctcctcctcctcctcctcttcctctgccGTGACCGGAGCGCGAGGACAGCGGAGTGTCCGGCTCGAGGACGTGTTCATCGCGGTAAAGACCACGCGACACTTCCACCGAAACCGCCTCGCGCTCCTGCTGGATACCTGGATCTCCAAGACCAAAGAGCACacaTATATCTTCACAGATTCCACAGATAAGGAGATCAGATCtagagggttCAACATCATCGTCACCAGTTGTTCACCTGAACACACTCGTGAGGCTCTCTCCTGTAAGATGGCTGCTGAGTACAATCACTTCATGGCCTCTGAtaaacagtgagtgtgtgactcCAGTTAACTGACGGAGCCATGTTGAGCACCAGAGTTAGCGAGTTAGCGCTGTTTAGCATTAGCGCTGTTTAGCATTAGCGATGTAGCTGTAACACTGATGCagtatttttcccccaaaccCCAGACTTCATTCCTACTTAGTGTTCTGACTGAAACGTCACAGTCGCTTGAGGTTTCACCCCAAATACTATCAGACCCCAGAGTTTGAGACACTGTTTGGTGttagtggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgctctgTCTGTAACGCAGGTGGCTGTGCCATGTCGATGATGATAACTACCTGAATCCAGGTGcgctgctctctctcctctccgaGTTCTCATTGGACAGAGATGTGTACGTGGGGAAACCCAGTCTGGATCGACCAATCAAAGCCCAGGAGCAGCTGCCTAACAACAAGACAcGTGATGTACAGTTCTGGTTTGCTACAGGAGGGGCGGGGTTCTGTCTCAACAGGAAGTTAGCAGAGAAGATGGCTCCATGGGCAAGcggGTCCAGGTTAGAACACACCTCAGATGTAATCAGACTTCCTGATGACTGTGTGATCGGTTTCATCGTTGAGAGGCGACTGGGCGTGTCCATGATCCACAGCGACCTGTTCCACTCTCACCTGGAGAACCTCCTGCTGCTCACACCTGCACAGATCTTCAAACAGgttacTCTGAGTTATGGCCTGTTTGAGAATAAAATGAACAGTGTGGGACTGAAGGGAGGCTTCAGTAAAGAGGAGGATCCGTCCAGGTTTAAAACACTGCACTGTTTCCTGTACCCTCTGACGAGCTGGTGTCCACGAACATGACAACACTTCAATTCCCAGAATTCCCCTGGAGGAAATCTCACATCGTACACGCCAAAGACATGCACCATGTGTCACCGTGTCACCGTATCTCTGTCACTGTGTCATCACTGAGGAGAAAAGAGGGAACAGAACGCAGTTCTTAGcactttattagactttttcTTACAGATCTGAACTCTCTCGTTGTCGTGTTCTCAGTCTCGTGGATCTGGAGTTCACGTGGATGTTCTTCAGTTGCAGCTCGAAATGTTCTTGAATTGGGTCTTACCTTTCCACACTCCTGGCCGGCGCGCCACCTGTGTCTGATGTGTAAAGTGTTAGAAATTAACAGAACATTGTAAGAGGAGGTTGTTTCTTATTCATATAGTATCACAGCATGAAGAGCTCACACTCCTCATAAACACCACACACCTGAACACGGTGTTTATTCACGTCTGAACACGGCGTTTATTCACGTCTGAACACGGCGTTTATTCCCGTCTGAACACGGCGTTTATTCCCGTCTGAACACGGCGTTTATTCGCGTCTGAACACGGCGTTTACTCGCGTCTGAACACGGCGTTTATTCGCGCCTGAACACGGCGTTTATCCGCGCCTGAACACGGCGTTTATCCGCGCCTCTGAACACGGCGTTTACTCACGCCTGAACACGGCGTTTATTCGCGTCTGAACACGGCGTTTATCCGCGCCTGAACACGGCGTTTATCCGCGTCTGAACACGGCGTTTATCCACGCCTGAACACGGCGTTTACTCACGTCTGAACACGGCGTTTATTCACGTCTGAACACTGATTTAATAAGAAGCTCTTCCAGgaaagtgtgtgtcagaggTCAGAGCATGTCCATGTTCTTCATGTAGGTTAGAAGAACAAGAACACACCTCAGAACAAAGGTTTATTGATCCCAGTTTATTCAGGCCGAGTGTAAAACTGCTCTTAAACTCAGAGGCCTGGTTCCTTATTCCTGCTTTAATTATACCATTTGTTTACAGCGTGgatcatatttacatttactataGCCTGCTGAAGTGTTCAGTACTCAGAGTACTAACAGAAAGCACttaaaggagtgtgtgtgtgtgtgtgtatcagaattttacacattttgtacagACAAATTTGCACtggaataacaataaaactCCTCATTTAGTTTAAACAGGagcacacacctgtgtgtattGAGTATGTAGTGTGTACATTACTGCAGTCTGCGGTTTTCTTTGTACTGAGACACTGTTTTCATAAACATCAAGAAATTGTGCGGATTTCCTATTGAAAAGTGTGTAACTGCTGCAGAAATGATCTCATGTATTAGTCACTTAAAAATTCCCTGATGTTTACCTGTACAATCAAAATGAAAGCTTCAGTAATATCTgtcctaccacacacacacacacacacacacacacacacacacacacattactcactACAGCTATTCAGAGTGGAGATAATcacacagtgaggatttaatactgaaatgtcACATCgatattcagacctcagacataactacagactttTCAGAAGTTACGTGAGGTTCCACGTgcgggggcggagtttgtctatGCCAGGGATTTGTAGAGgcggcagatgcaagtgcagatttttactgtataaagtgcaaaacaaacaacaaaacagtgaaaacaagaaccgGAAATGTAAACAATGGCTACAAGGCCAAAACATGTAGACTATGAGCGAGGCTGTggcacacacaacaacacatacacacaacaacacatacacacaacaacacacacatgataACACATACACgacaacacatacacacgacAACAACAGCTTGACAACGAGGTGCTGAGAAACTATATAGAGGTGATAATCAGAGtgaaacaagacacaggtgataGTGGTTAggacatgtgacatgctggggctgatgggaagtgtagttcaGAGCCCCTTTGGTGCTACCATGACAGTCTAaaaggcgtgtctcagttaggCTCAATTCTGATTTTAAACTTTCAAAATCAATTTTTTCAAATCAAAAGAGTGATTtgaaatcccacacacacatttgatttATGATTTCATGACTACGATTCAGTGTCTCGTCTCCATTAAGTTGCGCTTGAGTAATGTTAGAGCATGATATTAAAACAATGTAAAGTAACAG
>XM_034299551.1
CATGAAAAGGAAGCCATGACCAAATATGAAATGCTCGTGAGATGGAAGCCGAGCCGCGCGGTGCCGGTGGCCGCGCTCGCGCTCCTCTTCATCATCGCCTTTGTGCACTCGCGCCTGCGGAACGGAAAAGTGAGCGCGCGCGTGGACAAgccatcttcatcctcctcctcctcctcctcctcttcctctgccGTGACCGGAGCGCGAGGACAGCGGAGTGTCCGGCTCGAGGACGTGTTCATCGCGGTAAAGACCACGCGACACTTCCACCGAAACCGCCTCGCGCTCCTGCTGGATACCTGGATCTCCAAGACCAAAGAGCACacaTATATCTTCACAGATTCCACAGATAAGGAGATCAGATCtagagggttCAACATCATCGTCACCAGTTGTTCACCTGAACACACTCGTGAGGCTCTCTCCTGTAAGATGGCTGCTGAGTACAATCACTTCATGGCCTCTGAtaaacaGTGGCTGTGCCATGTCGATGATGATAACTACCTGAATCCAGGTGcgctgctctctctcctctccgaGTTCTCATTGGACAGAGATGTGTACGTGGGGAAACCCAGTCTGGATCGACCAATCAAAGCCCAGGAGCAGCTGCCTAACAACAAGACAcGTGATGTACAGTTCTGGTTTGCTACAGGAGGGGCGGGGTTCTGTCTCAACAGGAAGTTAGCAGAGAAGATGGCTCCATGGGCAAGcggGTCCAGGTTAGAACACACCTCAGATGTAATCAGACTTCCTGATGACTGTGTGATCGGTTTCATCGTTGAGAGGCGACTGGGCGTGTCCATGATCCACAGCGACCTGTTCCACTCTCACCTGGAGAACCTCCTGCTGCTCACACCTGCACAGATCTTCAAACAGgttacTCTGAGTTATGGCCTGTTTGAGAATAAAATGAACAGTGTGGGACTGAAGGGAGGCTTCAGTAAAGAGGAGGATCCGTCCAGGTTTAAAACACTGCACTGTTTCCTGTACCCTCTGACGAGCTGGTGTCCACGAACATGACAACACTTCAATTCCCAGAATTCCCCTGGAGGAAATCTCACATCGTACACGCCAAAGACATGCACCATGTGTCACCGTGTCACCGTATCTCTGTCACTGTGTCATCACTGAGGAGAAAAGAGGGAACAGAACGCAGTTCTTAGcactttattagactttttcTTACAGATCTGAACTCTCTCGTTGTCGTGTTCTCAGTCTCGTGGATCTGGAGTTCACGTGGATGTTCTTCAGTTGCAGCTCGAAATGTTCTTGAATTGGGTCTTACCTTTCCACACTCCTGGCCGGCGCGCCACCTGTGTCTGATGTGTAAAGTGTTAGAAATTAACAGAACATTGTAAGAGGAGGTTGTTTCTTATTCATATAGTATCACAGCATGAAGAGCTCACACTCCTCATAAACACCACACACCTGAACACGGTGTTTATTCACGTCTGAACACGGCGTTTATTCACGTCTGAACACGGCGTTTATTCCCGTCTGAACACGGCGTTTATTCCCGTCTGAACACGGCGTTTATTCGCGTCTGAACACGGCGTTTTCTCGC

Function

NR:

description
PREDICTED: beta-1,3-N-acetylglucosaminyltransferase manic fringe-like

GO:

id name namespace
GO:0007389 pattern specification process biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436383 True 4058 TUCP 0.46 8 19213078 19223020
XM_034299551.1 False 1570 mRNA 0.51 9 19214863 19235186

Neighbor

gene id symbol gene type direction distance location
elfn2a elfn2,LOC105030764,LOC106564442,LOC106590757 coding downstream 7088 19135589 ~ 19205990 (-)
LOC113524274 LOC108259477 coding downstream 166451 18892981 ~ 19046627 (-)
si:ch211-246m6.4 LOC108259532,LOC108414346 coding downstream 367401 18840817 ~ 18845677 (-)
cntnap5b LOC108259481,LOC108411251 coding downstream 559975 18597763 ~ 18653103 (-)
LOC117596042 NA coding downstream 644089 18551322 ~ 18568989 (-)
tmem178 tmem178a,LOC105026821,LOC107691291 coding upstream 45876 19281062 ~ 19288508 (-)
LOC113524267 LOC108259537 coding upstream 80910 19316096 ~ 19320662 (-)
LOC113525355 LOC108259503 coding upstream 314759 19549945 ~ 19556707 (-)
LOC113525354 LOC108259500 coding upstream 321891 19557077 ~ 19566528 (-)
G368282 sh3bp4,LOC107389529 non-coding downstream 373498 18764525 ~ 18839580 (-)
G368280 bzw1,LOC108414345,LOC107653537 non-coding downstream 376019 18832484 ~ 18837059 (-)
G368326 NA non-coding downstream 385911 18824392 ~ 18827167 (-)
G368320 NA non-coding downstream 394214 18818031 ~ 18818864 (-)
G368278 NA non-coding downstream 511451 18701364 ~ 18701627 (-)
G368390 NA non-coding upstream 27375 19262561 ~ 19265468 (-)
G368391 LOC100709284 non-coding upstream 37009 19272195 ~ 19275190 (-)
G368388 slc8a1a,LOC108415960,LOC107737224 non-coding upstream 40639 19275825 ~ 19279848 (-)
G368403 NA non-coding upstream 68864 19304050 ~ 19304797 (-)
G368406 NA non-coding upstream 92169 19327355 ~ 19340970 (-)
si:ch211-246m6.5 NA other downstream 324007 18853708 ~ 18889071 (-)
s100b s100b,LOC108259544 other downstream 483617 18701902 ~ 18729461 (-)
ahr2 LOC108259484 other downstream 706386 18301081 ~ 18506692 (-)
LOC117596053 LOC108259411,LOC108259445 other downstream 778217 18427461 ~ 18434861 (-)
LOC117596063 NA other downstream 985299 18198642 ~ 18227779 (-)
G368523 NA other upstream 294701 19529887 ~ 19544880 (-)

Expression


Co-expression Network