G368390


Basic Information

Item Value
gene id G368390
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 19262561 ~ 19265468 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU436415
tgtcagAGGAGATTGGTTTGTCTCTACCCTGCACCTTCCTGTACACATCTCtccctgatacacacacacacacacacacacacacacaaaggaacattttaattagattttattaGATAAACCGTGTTTGTAAAACCGTCTACAGTTCTGTAATAAAACCCAGTGTGATGGACGGAGAGTGAGGAGTGATGAGAAACATTACAGGATGTGCGTTACAGTGGATCACACAGCGCTACGTGAAGCCACAAAGCTCAgtttacataaataataaactttgtgatctttcatttacatttttcaggCCCAAAATAAAAGTGCAGAAATAAGTGTACAGGACAGATATACAGGAAGTGCTGTACagataaacaggaagtagtagTGTTACACTTTGCGTGAGGAGTAAAGCAGGCTCTGCTACTGatcacacacagttacacattCAGTGGAAAGTCAAGTTTCTTACCAAACAGCTGCTTGTCTATTAAAGAGACGGTCAGAAATATACGGTTAGCATAGCTAGTTAGCTTCAGTGCTAAAGAGTTTTAGCATGAGCATTTCCCATAAAAATGGCCGTACCTGTCTTTATGAAGCCACCTACATCCAcaaaacagcaaagaaagaagaagCAGATTATTACAGACACAATTAAACTCTACTGAACACGAATAAAAACAGACACTGATTAAGATTAAACCTcgttttaaaggaacagtttggggaaaattGAAAACGTCCATAATGTCCCTTTTCCCACAAATGGAGTCGATCGGCTgtgatgctaatgtagctaacagttAACTGAGCCTAATAGCCTCCAGGTTAGCACATTGCGCTAACGTTTGTGTGTAGCTCCTCCCACAGCGGCGTCTCCCACAGCGGCGTCTCCCACGCGGCTTTGGGGAGTGTTCAGTGTCTCAGACTTTTAGTGCAACgcgctaaactggaggctacgCTTCCCTTCCTGTCACAGACATCAGCATCGTCGCTCCAGAACTGAAAAACACCACACTGACACGGCCCAGCTCATCGACTACATCTGCAGTAAACGggaaaagatagatagatagatagatagatagatagatagatagaaacacTTACCACACTCATGCAGTAAGACAGCTGATGAATGTtggagaaaagacagaaacagaagtgAGTGATGAATGAAGCAGAGCTGTCTaacaacttcacacacacacacacacagtgatcacTTTACTCAAGATGGcttaagtttgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtcttaattaatttcatttactgATCATGTTCCTAACATCAGCATTAACACAACACTTTAATCTGATCACGCAGCTCATCTTCTGTAATCGATATATTTTTAGTCTGCATTACATGAGAATCTCGGCTGTCATGTTAATGTTTGAAAATTCCGCTACTTCAGTGAAGACGGCAGACATTTTGATGCAAAATGGATGCTCTGTTCTAAGCTGAACACTAGCTACAGCTGCAGCTAACAGCACCATCAACAACACTGAATTTTTATAAAGAATGAAAActcattattaataatgttcttTGGTTTTaggtgaataataataaagttttttgAGGCAGTGAGAATGTGGAGGTGTGGTTCTGAGGGAAAGCTCTGATGGCCGTGAGGATGAGGAGCAGCGCAGGAGGAAGAGAGCGAGGCTCAGACACACAGGAAGCTGCaggaataaaaagagaaaagcttCGAGAGCCGATAGTGAGCTTTTTAACAACACGTCTCGCCCTCTTTCACCTGTCcatcctctcctcctccactcAGGCTCCTGCAGCTGGATGTAGAAGTTCGCCTGCTTGTCGTACTCATCGTGGTCAACAATTTTAACCCTGATGCTTTTCCTGCAGGAGGAAACACATTTATCACTAAAGATCATTTAATTTCCTGCTCTGACGCTTCGGCGGCCATCTTTACTGTGGGTGAGAAGGGGTGGAGCTTAGAATAGCACAGCGCTGTGAGGTTACACTGAGAGAGGGCGGAGCTTGGAGAAGCACAGCCCACCTTTCCTCTCACTCATCTCCACCAGTTGCGGCTCTCCGATCTCCATGAAGAAGTTCTTGTTCTTTTCGTACTCCTCGTCATCGATAATATTGATCTGAACAGatttactgagagagagagacacacagagacagagacagaaagagagagacagagagagagacacggagacagagagacagacagaaagagagagacagagagagtgagagagacagagagagtgagagagagagagatagagagagatagagagagacacagagagagagagacagaaagagagagagagagagacacagagagagagagacagaaagagagagagagagagagagagagagatagagagagagacacagagagagtgagacagaaagagacagttGCAGAGATGAGAGCAGTGTGAGGAAATAACAGCTTTATAGGTGGGTAGgagaatattacataaatatgtgtgtgtgtgtgcatgtgtgtgcatgtgcgtgtctgtgcgtgtatgtgagtgtgtgcgtgtgtgtgcacgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgtgcgtgggtgtgcgtgtgtgtgcgtgtctgtgcgtgtctgcgtgtgtgtgtgtgcgtgtgtgcgtgcgtgtgtctgtgcgtgtgtgtgtgcgtgcgtgggtgtgcgtgtgtgcgtgggtgtgcgtgtgtgcgtgggtgtgcgtgtgtgtgcgcgtgggtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436415 True 2786 lncRNA 0.45 2 19262561 19265468

Neighbor

gene id symbol gene type direction distance location
elfn2a elfn2,LOC105030764,LOC106564442,LOC106590757 coding downstream 56571 19135589 ~ 19205990 (-)
LOC113524274 LOC108259477 coding downstream 215934 18892981 ~ 19046627 (-)
si:ch211-246m6.4 LOC108259532,LOC108414346 coding downstream 416884 18840817 ~ 18845677 (-)
cntnap5b LOC108259481,LOC108411251 coding downstream 609458 18597763 ~ 18653103 (-)
LOC117596042 NA coding downstream 693572 18551322 ~ 18568989 (-)
tmem178 tmem178a,LOC105026821,LOC107691291 coding upstream 15594 19281062 ~ 19288508 (-)
LOC113524267 LOC108259537 coding upstream 50628 19316096 ~ 19320662 (-)
LOC113525355 LOC108259503 coding upstream 284477 19549945 ~ 19556707 (-)
LOC113525354 LOC108259500 coding upstream 291609 19557077 ~ 19566528 (-)
G368282 sh3bp4,LOC107389529 non-coding downstream 422981 18764525 ~ 18839580 (-)
G368280 bzw1,LOC108414345,LOC107653537 non-coding downstream 425502 18832484 ~ 18837059 (-)
G368326 NA non-coding downstream 435394 18824392 ~ 18827167 (-)
G368320 NA non-coding downstream 443697 18818031 ~ 18818864 (-)
G368278 NA non-coding downstream 560934 18701364 ~ 18701627 (-)
G368391 LOC100709284 non-coding upstream 6727 19272195 ~ 19275190 (-)
G368388 slc8a1a,LOC108415960,LOC107737224 non-coding upstream 10357 19275825 ~ 19279848 (-)
G368403 NA non-coding upstream 38582 19304050 ~ 19304797 (-)
G368406 NA non-coding upstream 61887 19327355 ~ 19340970 (-)
G368432 NA non-coding upstream 123508 19388976 ~ 19394961 (-)
mfng LOC108259517 other downstream 27375 19213078 ~ 19235186 (-)
si:ch211-246m6.5 NA other downstream 373490 18853708 ~ 18889071 (-)
s100b s100b,LOC108259544 other downstream 533100 18701902 ~ 18729461 (-)
ahr2 LOC108259484 other downstream 755869 18301081 ~ 18506692 (-)
LOC117596053 LOC108259411,LOC108259445 other downstream 827700 18427461 ~ 18434861 (-)
G368523 NA other upstream 264419 19529887 ~ 19544880 (-)

Expression


Co-expression Network