G368432


Basic Information

Item Value
gene id G368432
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 19388976 ~ 19394961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU436469
GTATTCAAAACCACATTCCATCACACACGCCGCACGAACCGAGATTTCTCACTTCTGTGTAAATTAGTTATGACGCTGTAAAGAAGCGACAAATCCAACCGATCGTCTCGAATGATTCCTACAGAGCGTGCGGTCcgactttagttcctacctgcaattactTCCtgcagaaatggaagaaaagctTATAAGTGTGGTCTCCTCTTCTCCGAGCGCTCGTTCAATGAGTACAGAGACAATaggaagagaaataaagcttGGGAGGAAGTAGCAGTGATGGTTGgtgtctctggtgagtgtatgttgatagtacagttagcttatttttctaatctaatctgagaacgaaGCCGAGAGCGTAACACGTAAATCACaaacaattttcacactgaataGTGTGTTAGTTAATTGTGTTTAaatagttagctttagaagcgaTATACAGCTACCAcagtttctattaaaaaaaaagctgaacaggccacgcccacaagtgatGAACTACAAGCAACATGAGAGATTCAACGCCTGTTAGAAAGTTAGAGAGACtgttgaaatctgattggctgagggaggccatgtttattttattttatttaaggagAAGGAGTGCGATTCAGAGACTGAGGAAAGTCTGGGCTCACTGATGGGTTCTGGGATCGTGAGGGCGTAAGATCCGGTgtgtaaaatacagaaatgataCACGTCTAAAACGCACCTCGGCTCTGACACAGTGATGACTACGATGTGTGAAAACGAGAGAAATATTCTCCGTAACGCTCGTTTCACCAGAACATCACGGCTCACGTCATTATTGCGACTGATGGCATCACGTTTCTCTCACGGCTCCGAGCTGCAGCTTCTAAAGTGCAGGAGTGTAAAAGTACAGTACTGAGAGAACACAACACTCCGAGAGAGAGCACCTGATACCCCAACACaacagtcacatgaccacgcACACGTCACATGACCACGCACACGTCACATGACCACGCACACGTCACTTTATTCTCATCCCCGTCTGGCCCGAACAATGCTGGATCACGGGACTGGACTTTATGCAGATGAGTCCATGTGCCACACTGGGAGAGCAGACCGGTGTCTGTCGAGAAGGAGAAGACTCCTCATTAGCGTCTGAGCTCCTCGTCCTCATAACCAAACATTATTACCTTAACGTTATTAAACGTGTTTATGAAGCGCGTCAGGTTACTAACACTAGCTAGCCTCTGAGTGAGTGAGCTAGCCGAGTGGACGCTGAGGTACAGTATGATGAAGGAAACTGCAGCcatgtttatttaatggtgTATGAAAGCTTACAGACATTTAAGAGCAAGTAAACATATCAGATCGTTTACTTCCCCAAAATCACATTCCACACGCTCCACGTTATTGTATTAACATACGTAACCATGCCCAGTAAACCAGCACTAACCACACTATGTGAAATGATGATGTCATTTCACAGCGTGTTAGTGATGTCATGACTTTGGATATCACATTTAATcaactcatttgcatatttcacTTTGTGAAGCAGAGCACCTTTAGATCAAGCAGAAACTGGGTTTAAGGTTACCATATAGCGATGACTGTCCACACACCGGGAGCTACGCCGCACTGCTACGCCGCACAGCTACGCCGCACAGCTACGCCATATACAACTTCAACAATGCAACACGATTAAGACAAAGTCATATTAACATGTGTGATAGAATCGATCAATATATGTACGTGATGTGGAAATAAAAGACAGCAGAATTACGAAGTGCACCTTTAAAGATTACTGCTTTCCCTTAGCACAACCTTAATGATCATAAATATCATTTAGCGCACCTTTAATAGTCAGTGACTTCACTTAGCGCACCTTTAATGGTCAGTGACTTCACTTGGtgctttaaaaatcatttaaaagtcTGTAACTCTAAAGTAAATAAGTGCAAATAAGCAGTAAAAAGCTGAGTGTTCATTCTGAAATTATACACAAGTCAATGAGATCCACAGAAACACAGCAGCTCGTGTGCTCAGAAACAAGAACATGCAGAAATCACGCTGCTCATCATAGCCACTGCTGCGTATTCACtgcactctcactgcacactctctgactgcactctcactgcacactctctgactgcactctcactgcacactcactgcactctcactgcacactctctgactgcacactcactgcacactctctgactgcacactcactgcacactctctcactgcactctcactcactactgcactctcactcactgcactctctctcactactgcacactctcactactgcacactctcactcactactgcactctcactcactgcacactctcactcactgcacactctcactcactgcacactctcactcactgcacactcaccactgcacacctcactcactgcactctcctcactcactgcactctctcactcactgcacTCTCACTACTGCACACTCTCTCACTACTGCACTCTCTCACTACTGcactctcactgcactctctctcactgcactctcactgcactctcactCACTGCTGTGTATGCACTGCACACTTTCGATAACGTTATAAAACTCCAGAATGTGAACACCAACTGATCATGAATTTcccttcaacacacacacacacttctctctctcccacacacacacagtggctgagttgtgtgtgtgtgtgtgtgtgtgagaaagaaaagtgtgtttgtgtgtgtgtgtgtgtttgtgggagaaagagaagtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgcgggagaaagagaagtgtgtgtgtgtgtgtgtgtatgtgtgtgagaagtgtgtgtgttctctcagcTGTTTTTGTGCATCAGTTTGGCGAGCATGTTCTGGATTTGAGCGCGTGGGGAGAGAGCGGAGTGGCGTTGTGGGCGGAGCATGGCAGAATGTGGGCGGGGTATCCCAGGGCGA

Function

NR:

description
carnitine O-acetyltransferase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436469 True 2964 lncRNA 0.45 3 19388976 19394961

Neighbor

gene id symbol gene type direction distance location
LOC113524267 LOC108259537 coding downstream 68314 19316096 ~ 19320662 (-)
tmem178 tmem178a,LOC105026821,LOC107691291 coding downstream 100468 19281062 ~ 19288508 (-)
elfn2a elfn2,LOC105030764,LOC106564442,LOC106590757 coding downstream 182986 19135589 ~ 19205990 (-)
LOC113524274 LOC108259477 coding downstream 342349 18892981 ~ 19046627 (-)
si:ch211-246m6.4 LOC108259532,LOC108414346 coding downstream 543299 18840817 ~ 18845677 (-)
LOC113525355 LOC108259503 coding upstream 154984 19549945 ~ 19556707 (-)
LOC113525354 LOC108259500 coding upstream 162116 19557077 ~ 19566528 (-)
G368406 NA non-coding downstream 48006 19327355 ~ 19340970 (-)
G368403 NA non-coding downstream 84179 19304050 ~ 19304797 (-)
G368388 slc8a1a,LOC108415960,LOC107737224 non-coding downstream 109128 19275825 ~ 19279848 (-)
G368391 LOC100709284 non-coding downstream 113786 19272195 ~ 19275190 (-)
G368390 NA non-coding downstream 123508 19262561 ~ 19265468 (-)
G368439 NA non-coding upstream 9537 19404498 ~ 19404763 (-)
G368503 NA non-coding upstream 81304 19476265 ~ 19539669 (-)
G368517 NA non-coding upstream 112727 19507688 ~ 19508501 (-)
G368472 NA non-coding upstream 126592 19521553 ~ 19554477 (-)
LOC113524312 LOC108259540 other downstream 73518 19176362 ~ 19315458 (-)
mfng LOC108259517 other downstream 153790 19213078 ~ 19235186 (-)
si:ch211-246m6.5 NA other downstream 499905 18853708 ~ 18889071 (-)
s100b s100b,LOC108259544 other downstream 659515 18701902 ~ 18729461 (-)
ahr2 LOC108259484 other downstream 882284 18301081 ~ 18506692 (-)
G368523 NA other upstream 134926 19529887 ~ 19544880 (-)

Expression


Co-expression Network