slc6a2 (slc6a2,LOC108443369,LOC106562417,LOC107713067,LOC107563470,LOC107657091,LOC107548932,LOC107755047)


Basic Information

Item Value
gene id slc6a2
gene name slc6a2,LOC108443369,LOC106562417,LOC107713067,LOC107563470,LOC107657091,LOC107548932,LOC107755047
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 5315829 ~ 5343972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937573.2
GGCTCTAAGGGAGGGGACACTTCTGGCTCTGGGAGAATGGGCAGCAGCCTCTCATTCGCGTCCGGAGCGCACGAGCAGCCGGGCATGGACCAGCAACCTCCGACTCACAACTGATGAAGCAGAGGAGCGGGCAAGCCAAGACCAAAAACACGTCCTTATCACCCTCctcttcctcaaagtcctccTCCTCAGCATCatctcatcatcctcatcatcaacatcaacatcatcatcatcgccagTGCGGACTCGAGCGCCGGCCACCCGTCCCGCCTTTCCCCAGGCAGCGCGTGCACACCGGCGGCCATCATGAACGTGCAGGTGATGCCCGAGCACAAGCTGGCGTCGGTGGCCCCGCTCAAACCGTACGCCGTGGAGAAGAAGGATGTGGAGCTCATCCTGGTCAAAGAGCGCAACGGCTTGCAGTACACGAGCACCCGCACGCGCACGTGCACCGAGACGCCGGAGCGCGAGACATGGGGCAAGAAACTGGACTTCCTGCTCTCCGTCATCGGCTTCGCCGTGGACCTGGCCAACGTGTGGAGGTTCCCTTATCTGTGCTACAAAAACGGCGGAGGGGCCTTTCTGATCCCGTACACCATGTTCCTGTTCATTGCGGGAATGCCGCTGTTTTACATGGAGCTGGCTTTGGGTCAGTATAACAGAGAAGGGGCAGCCACTGTGTGGAAGATCTGCCCCGTTTTCAAAGGTGTTGGTTATACCGTGATCATCATAGCTTTGTATGTGGGCTTCTACTACAACGTCATTATAGCATGGTCTCTGTACTACCTGTTCTCCTCATTCACGAGTGAGCTGCCCTGGCAGCACTGTAACAACACATGGAACAGCCCCATGTGCAAAGACCCCAAACTCATCAATGGCTCCTTTTTCCTGGGCAATGCGACCTACGCCAAGTACAAGCGAACGCCTGCTGCTGAGTTCTATGAACGAGAGGTACTGCGCATCCATGAGAGTCAAGGCATTGATGACCTGAAAGAACCTCGCTGGGAGCTGACGCTTTGCCTCGTGGTGGTCGTCTTTATTCTCTACTTCAGCCTGTGGAAGGGCGTAAAGTCCTCTGGAAAGGTGGTGTATATCACTGCCACCATGCCCTACATTGTACTTCTGGTGCTGCTGATCCGAGGCATCACACTACCTGGTGCTATGAACGGAATCCGTGCATACCTCCACATTGACCTCAATAAGCTCAACAATCCTCAAGTTTGGATTGAAGCTGCCACTCAGATTTTCTACTCTCTGGGGGCTGGTTTCGGTGTGCTTATCGCTTTTGCCAGCTACAATAAATTTGACAACAACTGCTATAGGGACGCCCTCCTGACCAGCACCATAAACTGCATCACCAGTTTCTTCTCAGGGTTTGCCATCTTCTCAGTGTTGGGCTACATGGCCCATGAGCATGGCGTCAGCATCAAGGAAGTGGCCACAGATGGGCCTGGGCTTGTGTTCATTATCTACCCAGAGGCCATTTCCACTCTCCCTGGATCCACTTTCTTTGCCATATTCTTCTTCATCATGCTTCTAACCCTAGGCATTGACAGCTCTATGGGTGGCATGGAAGCAGTCATCACTGGACTCACAGATGACTTCAAGATACTAAGGAGAAACAGGAAATTGTTTACCTTCATCACTGCATTTGGGACCTTCCTGGTTGCATTATTGTGCATTACAAAGGGAGGGATCTATGTCTTCACCCTACTGGACCACTATGCTGCAGGGACATCCATTCTGTTTGGGGTTCTTGTGGAGGCCATAGGAGTGTCCTGGTTCTATGGGGTGGACAGATTCAGTGAAGACATTGAACGGATGATGGGCTTCAAGCCAGGACTCTACTGGAGGCTTTGCTGGAAGTTTGTCAGTCCTGTTTTTCTGCTGGTTGTGGTGATTGCCAGCATTGTTACTGCCAACAATATGGAATATGATGACTACATCTTTCCTACCTGGGCTACTTTGGTGGGCTGGGGCATTGCCCTTTCCTCGATGATCTTTGTACCACTCTATGCCATCTACAAGTTTGTCAGATTGCCAGGCACCTTCAAGCAGAGGATAGCGTACTGTATTACACCAGAGCATGAACATCACCTAGTGGCAGAGGGAAACGTCAGGCAGTTCAAGCTCAAACACTGGCTTGCCATCTGA
>XM_034299676.1
ATGAACGTGCAGGTGATGCCCGAGCACAAGCTGGCGTCGGTGGCCCCGCTCAAACCGTACGCCGTGGAGAAGAAGGATGTGGAGCTCATCCTGGTCAAAGAGCGCAACGGCTTGCAGTACACGAGCACCCGCACGCGCACGTGCACCGAGACGCCGGAGCGCGAGACATGGGGCAAGAAACTGGACTTCCTGCTCTCCGTCATCGGCTTCGCCGTGGACCTGGCCAACGTGTGGAGGTTCCCTTATCTGTGCTACAAAAACGGCGGAGGGGCCTTTCTGATCCCGTACACCATGTTCCTGTTCATTGCGGGAATGCCGCTGTTTTACATGGAGCTGGCTTTGGGTCAGTATAACAGAGAAGGGGCAGCCACTGTGTGGAAGATCTGCCCCGTTTTCAAAGGTGTTGGTTATACCGTGATCATCATAGCTTTGTATGTGGGCTTCTACTACAACGTCATTATAGCATGGTCTCTGTACTACCTGTTCTCCTCATTCACGAGTGAGCTGCCCTGGCAGCACTGTAACAACACATGGAACAGCCCCATGTGCAAAGACCCCAAACTCATCAATGGCTCCTTTTTCCTGGGCAATGCGACCTACGCCAAGTACAAGCGAACGCCTGCTGCTGAGTTCTATGAACGAGAGGTACTGCGCATCCATGAGAGTCAAGGCATTGATGACCTGAAAGAACCTCGCTGGGAGCTGACGCTTTGCCTCGTGGTGGTCGTCTTTATTCTCTACTTCAGCCTGTGGAAGGGCGTAAAGTCCTCTGGAAAGGTGGTGTATATCACTGCCACCATGCCCTACATTGTACTTCTGGTGCTGCTGATCCGAGGCATCACACTACCTGGTGCTATGAACGGAATCCGTGCATACCTCCACATTGACCTCAATAAGCTCAACAATCCTCAAGTTTGGATTGAAGCTGCCACTCAGATTTTCTACTCTCTGGGGGCTGGTTTCGGTGTGCTTATCGCTTTTGCCAGCTACAATAAATTTGACAACAACTGCTATAGGGACGCCCTCCTGACCAGCACCATAAACTGCATCACCAGTTTCTTCTCAGGGTTTGCCATCTTCTCAGTGTTGGGCTACATGGCCCATGAGCATGGCGTCAGCATCAAGGAAGTGGCCACAGATGGGCCTGGGCTTGTGTTCATTATCTACCCAGAGGCCATTTCCACTCTCCCTGGATCCACTTTCTTTGCCATATTCTTCTTCATCATGCTTCTAACCCTAGGCATTGACAGCTCTATGGGTGGCATGGAAGCAGTCATCACTGGACTCACAGATGACTTCAAGATACTAAGGAGAAACAGGAAATTGTTTACCTTCATCACTGCATTTGGGACCTTCCTGGTTGCATTATTGTGCATTACAAAGGGAGGGATCTATGTCTTCACCCTACTGGACCACTATGCTGCAGGGACATCCATTCTGTTTGGGGTTCTTGTGGAGGCCATAGGAGTGTCCTGGTTCTATGGGGTGGACAGATTCAGTGAAGACATTGAACGGATGATGGGCTTCAAGCCAGGACTCTACTGGAGGCTTTGCTGGAAGTTTGTCAGTCCTGTTTTTCTGCTGGTTGTGGTGATTGCCAGCATTGTTACTGCCAACAATATGGAATATGATGACTACATCTTTCCTACCTGGGCTACTTTGGTGGGCTGGGGCATTGCCCTTTCCTCGATGATCTTTGTACCACTCTATGCCATCTACAAGTTTGTCAGATTGCCAGGCACCTTCAAGCAGAGGATAGCGTACTGTATTACACCAGAGCATGAACATCACCTAGTGGCAGAGGGAAACGTCAGGCAGTTCAAGCTCAAACACTGGCTTGCCATCTGATGTGACCACTGGTGCTGGAATGCCATCGAAAATCCCAGGCGGCTGATGTGCCATGTGTGGACCCTGAGAGAAATGTGCCTCCAGTCAAGTGGACAAAGCGAAGCGATGACTTCTGTGTGTCTCAACCACGTACCCTATTGTCTGCACAGCTCTGCTTCTGTCCTGTGGGTCTCTTTTTCAAGTTGGTGGAGAAAAAAGtgttttctgtctgtattttgcttttttattattataataatttttttaaacattacaccTCCAAAAcctcaaatattttttaattatttatgaccattttttaattaattgtattaattattttttatacttcATCTCAACCTGCAGAACATTTAGTGTTTCCaaagtgtataaaaatacacagtcaCATGTCACTTATTttatctctgtgtttgtgtgggtggtgtgtgtgtaagagcatgtgtgtatgagggCATGAACAGTAACTAACACAGTTCTTTCCtctataatatttttttttccatttatcgACTAACTTTGGGCAGACACATTTCCCAGCTAATGTTAGGCTTTAAGAACATAAAGATCCCACACATTTTTCTGTGTCCCATAGCAGCAGTAAAACCGTTCTCGCAAGTGTATCCTGATGCCATTTCTGCTTTGTAGACACACACCACTGTGTCAGTGCCTTATTAAGAATCTACTGGTCACTTAttgacatttttaatccattttaataaGACCAAAATGAGTGTTTACTATAACCAAAACTTTAAAATTAATAGGAACCTTTCCAGAGATGATGCTAAGGATATATATTATTGTTAGAGATTAATTAAATAGCATAGATTCCCTAAAAAGACACCAAAAGTTTTTCATAATTgcaaaaagtttaataaaatcaCTCCAAAGATTGAGTTATATGACAAAACTGTTAGGTCAATATAATACAAAGTGTAAGgtcatattatataatacaaaatGTTAGGTCACActatatattacaaaatgttaGGTCATACTATATAATAAAGGATATTTATCCTTAAATTTGCACTATgccaaaataattaattaaaaaagtgcaGGTCATGTTCAATATTGCTCTTGTTCAGTATTGTTCCAAAGTTAATGTTCAATATTCTTATCATCTGCAAATGTAGGATGTACACCAAATGGAGCTGGAGCCAATTAGATGAAATACAGCATaaagtttttcatttaaaaacaaacctcGGGTCAATTATACATGTTCAGTTAAATGAATCTATCAAAGTGGTTTTAGCCTCATTAAAGCTTGTTAATGACTGGgagttttattaataaagacCATCAAATATCCTACCCAATAAAACATAGATGATTTACATTACGATTTATAAGCAATTATTTCTAAGACAGGCAAAAAAGAGACTTGAACTGTCATAAAAAAGAGTTTTGTTTTATGCTTGAAAAGATTACACAGGAAAATGGTAGCTCAGtcgttaagatgttggactactgaagGTTTTGAGCTCAAATCCCAgcgctgccactgctgggcccttgagtaaggcccttaaccctcaactgcttagttgtataaatgagataaatgtaagttgctctgtataagggtgtctgccaaatgctgtaaatgtatacaGAGTTCTATTTCAtgtgtcacacacatacaactgTCATGCCCATATTATAATCTCTCCCtggtgattgtgtgtgtgtgtgtgtgtgtgttttggggtttCTAATTTGTTGAGAATTTCTCTCAGGTCAAATTTGTGTTGCGTCCctagtttaa

Function

symbol description
slc6a2 Predicted to enable dopamine:sodium symporter activity and norepinephrine:sodium symporter activity. Predicted to be involved in dopamine uptake involved in synaptic transmission; norepinephrine transport; and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body membrane; and presynaptic membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in hypertension and neurocirculatory asthenia. Orthologous to human SLC6A2 (solute carrier family 6 member 2).

NR:

description
PREDICTED: sodium-dependent noradrenaline transporter

GO: NA

KEGG:

id description
K05035 SLC6A2, NET; solute carrier family 6 (neurotransmitter transporter, noradrenalin) member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937573.2 False 2157 mRNA 0.52 15 5315829 5342195
XM_034299676.1 True 3625 mRNA 0.43 14 5316526 5343972

Neighbor

gene id symbol gene type direction distance location
lpcat2 lpcat2 coding upstream 9748 5293211 ~ 5306081 (+)
mmp2 mmp2,LOC107755129,LOC107563472,LOC107696695,LOC107713064,LOC107548946 coding upstream 28641 5267872 ~ 5287188 (+)
irx6a irx6 coding upstream 108709 5201533 ~ 5207120 (+)
irx5a irx5 coding upstream 255174 5057049 ~ 5060655 (+)
nod2 nod2 coding upstream 1604273 3702186 ~ 3711556 (+)
slc12a4 slc12a4,LOC107563468,LOC107740471,LOC107696691,LOC107548948,LOC107755124,LOC107657107 coding downstream 23576 5367548 ~ 5391141 (+)
hsd11b2 hsd11b2,LOC107755122,LOC107548951,LOC107657103 coding downstream 156003 5499975 ~ 5517575 (+)
agrp agrp,LOC108432372 coding downstream 195741 5539713 ~ 5543335 (+)
galr1b galr1b,LOC108259125,LOC108432392,LOC107548937,LOC107755042,LOC107740459,LOC107696670,LOC107563492,LOC105899736,LOC107657076 coding downstream 229237 5573209 ~ 5606016 (+)
nfatc3a nfatc3,LOC108432391,LOC107548920 coding downstream 308877 5652849 ~ 5727629 (+)
G360442 NA non-coding upstream 265928 5048460 ~ 5049901 (+)
G360443 NA non-coding upstream 268167 5047176 ~ 5047662 (+)
G360433 NA non-coding upstream 369419 4946207 ~ 4946410 (+)
G360245 NA non-coding upstream 656471 4615154 ~ 4659358 (+)
G360191 NA non-coding upstream 857925 4457681 ~ 4457904 (+)
G360540 NA non-coding downstream 66455 5410427 ~ 5410647 (+)
G360565 NA non-coding downstream 172236 5516208 ~ 5553167 (+)
G360590 NA non-coding downstream 311353 5655325 ~ 5655815 (+)
G360592 NA non-coding downstream 316213 5660185 ~ 5660502 (+)
G360597 NA non-coding downstream 321314 5665286 ~ 5665521 (+)
fto fto other upstream 550943 4586607 ~ 4764886 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other upstream 1548115 3713652 ~ 3767714 (+)
cebpa cebpa other upstream 2015146 3245710 ~ 3300683 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other upstream 2492491 2785627 ~ 2823338 (+)
igdcc4 LOC108259659 other upstream 2621542 2636289 ~ 2694287 (+)
lgr4 lgr4,LOC107700365,LOC107740414,LOC107554901 other downstream 987263 6331235 ~ 6404554 (+)
coro2ba coro2b,coro2ba,anp32a,LOC107755090,LOC107755092,LOC107663971,LOC107740437,LOC107700478,LOC107557695 other downstream 1602321 6946293 ~ 7005078 (+)
znf536 znf536,LOC107556245,LOC107696660,LOC107691894 other downstream 2621229 7965201 ~ 8140621 (+)
slc25a44b s2544,slc25a44b,slc25a44,LOC108438536,LOC107730245,LOC107698229 other downstream 3893217 9237189 ~ 9242763 (+)
serinc4 serinc4,LOC107701272,LOC107695356 other downstream 4926647 10270619 ~ 10291531 (+)

Expression


Co-expression Network