agrp (agrp,LOC108432372)


Basic Information

Item Value
gene id agrp
gene name agrp,LOC108432372
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 5539713 ~ 5543335 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937703.2
ACAGTTTTTCCAATTTCTACAGATTGTAACTGACCAAACTAGCATGAAGTCCTGATTCTGATTACTGTACTTTGCCTCTAAAACCTCATCTCAATCCAGTGGATAGCCAGCTTGCTGACAGAGTGGAGGAAACGTTTGTGAATCAGTGACCATGTTGAGTGTTGTGATCTTCTGCTGGTTGAGTCTCAGTGCCGTCCGGGTGGCGTCAGGTCTCGTCCACACTAACCGCATGGAGGTCTCGCACCCAAGTCTGAGGAGGACAGATACCTCGTTTTTCCCTGACATCACTGTGCAAGATTCAGGTCCTGCAGTGGACACAGTACAACTTAGAATTGATTCAGTTGAAGAACAGCTGATGGTGGATCCTGTTTCCTATGATGAGTACCCACAGGACATGGCAGATGCAGTACAGCTCCAGAGGAGAGGCACACGTTCACCAGGCCGCTGTATTCCACACCAACAGTCATGCCTGGGCCACCAGCTGCCCTGCTGCGACTCGTGTGATACGTGCTACTGCCGCTTTTTCAAAGCTTTCTGTTACTGCCGCAGCATGGACCACACCTGCAAACACAGACGCGCCTAGCACTCACAACACTGGCCCTGCAGGAGGCTGGGTTAAAGATGATATGCGGGTgtgaaaatgaaaccttatGCCAATGCACATTTCTCAGTATGCACAAGAATCCATGATGGTACTGCTTTACATTAAAGTGCCCTGAACCAACATTGAACAAAGCCATGAACTTAACACTCATTAACacttatcatttttaaaataatgaaccaGCACCTACATTAACCAATGTTAATCAGGAGTCCAAAATAATGGATTAATTGCCAATTAACTGACAAACGTCTTAAGAGATGCTGAATAGTGGATTTGAATATGTACACTTGAAAACTAAAGTTTAGGTTATTATCAACAATGCTCTAACATCCATTAATACATTGTGTTACCTGgtttatttgttaatatttcatatggtttattaatgctgaagtttatgatttgttcatgttaactaatgcagtaaataatattattatataaaggAAACCTTAATGTGAAGTGTAACATTCATGATTAACATGCAAAGATATAAATTTACAAAACCTTACAGGCATAAACTCAGAGATCCTCAGTGCAACAAGTAGACAACAATGACTGTGCATTGTTGTAATTGTTTATACATGTACAAATATATGTGAAAATGGtgtgttttttatgttattaaaaCCATAGCAAATTGgtatgcattattatttataatgttgCAAAacctata
>XM_026937704.2
CCCACCCACTGATTAGGATCATGTGGCCCCACTCCTCCTACTCCTTGGAGGCTTAAAAACAAGAGTTGGGTACACACCCTTAACCAGGGGTGAGGAACGCTGCAGTGGATAGCCAGCTTGCTGACAGAGTGGAGGAAACGTTTGTGAATCAGTGACCATGTTGAGTGTTGTGATCTTCTGCTGGTTGAGTCTCAGTGCCGTCCGGGTGGCGTCAGGTCTCGTCCACACTAACCGCATGGAGGTCTCGCACCCAAGTCTGAGGAGGACAGATACCTCGTTTTTCCCTGACATCACTGTGCAAGATTCAGGTCCTGCAGTGGACACAGTACAACTTAGAATTGATTCAGTTGAAGAACAGCTGATGGTGGATCCTGTTTCCTATGATGAGTACCCACAGGACATGGCAGATGCAGTACAGCTCCAGAGGAGAGGCACACGTTCACCAGGCCGCTGTATTCCACACCAACAGTCATGCCTGGGCCACCAGCTGCCCTGCTGCGACTCGTGTGATACGTGCTACTGCCGCTTTTTCAAAGCTTTCTGTTACTGCCGCAGCATGGACCACACCTGCAAACACAGACGCGCCTAGCACTCACAACACTGGCCCTGCAGGAGGCTGGGTTAAAGATGATATGCGGGTgtgaaaatgaaaccttatGCCAATGCACATTTCTCAGTATGCACAAGAATCCATGATGGTACTGCTTTACATTAAAGTGCCCTGAACCAACATTGAACAAAGCCATGAACTTAACACTCATTAACacttatcatttttaaaataatgaaccaGCACCTACATTAACCAATGTTAATCAGGAGTCCAAAATAATGGATTAATTGCCAATTAACTGACAAACGTCTTAAGAGATGCTGAATAGTGGATTTGAATATGTACACTTGAAAACTAAAGTTTAGGTTATTATCAACAATGCTCTAACATCCATTAATACATTGTGTTACCTGgtttatttgttaatatttcatatggtttattaatgctgaagtttatgatttgttcatgttaactaatgcagtaaataatattattatataaaggAAACCTTAATGTGAAGTGTAACATTCATGATTAACATGCAAAGATATAAATTTACAAAACCTTACAGGCATAAACTCAGAGATCCTCAGTGCAACAAGTAGACAACAATGACTGTGCATTGTTGTAATTGTTTATACATGTACAAATATATGTGAAAATGGtgtgttttttatgttattaaaaCCATAGCAAATTGgtatgcattattatttataatgttgCAAAacctata
>XM_026937705.2
ACAGTTTTTCCAATTTCTACAGATTGTAACTGACCAAACTAGCATGAAGTCCTGATTCTGATTACTGTACTTTGCCTCTAAAACCTCATCTCAATCCAGTGGATAGCCAGCTTGCTGACAGAGTGGAGGAAACGTTTGTGAATCAGTGACCATGTTGAGTGTTGTGATCTTCTGCTGGTTGAGTCTCAGTGCCGTCCGGGTGGCGTCAGGTCTCGTCCACACTAACCGCATGGAGGTCTCGCACCCAAGTCTGAGGAGGACAGATACCTCGTTTTTCCCTGACATCACTGTGCAAGATTCAGGTCCTGCAGTGGACACAGTACAACTTAGAATTGATTCAGTTGAAGAACAGCTGATGGTGGATCCTGTTTCCTATGATGAGGACATGGCAGATGCAGTACAGCTCCAGAGGAGAGGCACACGTTCACCAGGCCGCTGTATTCCACACCAACAGTCATGCCTGGGCCACCAGCTGCCCTGCTGCGACTCGTGTGATACGTGCTACTGCCGCTTTTTCAAAGCTTTCTGTTACTGCCGCAGCATGGACCACACCTGCAAACACAGACGCGCCTAGCACTCACAACACTGGCCCTGCAGGAGGCTGGGTTAAAGATGATATGCGGGTgtgaaaatgaaaccttatGCCAATGCACATTTCTCAGTATGCACAAGAATCCATGATGGTACTGCTTTACATTAAAGTGCCCTGAACCAACATTGAACAAAGCCATGAACTTAACACTCATTAACacttatcatttttaaaataatgaaccaGCACCTACATTAACCAATGTTAATCAGGAGTCCAAAATAATGGATTAATTGCCAATTAACTGACAAACGTCTTAAGAGATGCTGAATAGTGGATTTGAATATGTACACTTGAAAACTAAAGTTTAGGTTATTATCAACAATGCTCTAACATCCATTAATACATTGTGTTACCTGgtttatttgttaatatttcatatggtttattaatgctgaagtttatgatttgttcatgttaactaatgcagtaaataatattattatataaaggAAACCTTAATGTGAAGTGTAACATTCATGATTAACATGCAAAGATATAAATTTACAAAACCTTACAGGCATAAACTCAGAGATCCTCAGTGCAACAAGTAGACAACAATGACTGTGCATTGTTGTAATTGTTTATACATGTACAAATATATGTGAAAATGGtgtgttttttatgttattaaaaCCATAGCAAATTGgtatgcattattatttataatgttgCAAAacctata

Function

symbol description
agrp Enables melanocortin receptor binding activity and neuropeptide hormone activity. Acts upstream of or within with a positive effect on feeding behavior. Acts upstream of or within several processes, including neuropeptide signaling pathway; positive regulation of feeding behavior; and regulation of growth. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; female organism; and male organism. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human AGRP (agouti related neuropeptide).

GO: NA

KEGG:

id description
K05231 AGRP; agouti related protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937703.2 False 1286 mRNA 0.40 3 5540235 5543335
XM_026937704.2 True 1292 mRNA 0.41 4 5539713 5543335
XM_026937705.2 False 1277 mRNA 0.40 3 5540235 5543335

Neighbor

gene id symbol gene type direction distance location
hsd11b2 hsd11b2,LOC107755122,LOC107548951,LOC107657103 coding upstream 22138 5499975 ~ 5517575 (+)
slc12a4 slc12a4,LOC107563468,LOC107740471,LOC107696691,LOC107548948,LOC107755124,LOC107657107 coding upstream 148572 5367548 ~ 5391141 (+)
slc6a2 slc6a2,LOC108443369,LOC106562417,LOC107713067,LOC107563470,LOC107657091,LOC107548932,LOC107755047 coding upstream 195741 5315829 ~ 5343972 (+)
lpcat2 lpcat2 coding upstream 233632 5293211 ~ 5306081 (+)
mmp2 mmp2,LOC107755129,LOC107563472,LOC107696695,LOC107713064,LOC107548946 coding upstream 252525 5267872 ~ 5287188 (+)
galr1b galr1b,LOC108259125,LOC108432392,LOC107548937,LOC107755042,LOC107740459,LOC107696670,LOC107563492,LOC105899736,LOC107657076 coding downstream 29874 5573209 ~ 5606016 (+)
nfatc3a nfatc3,LOC108432391,LOC107548920 coding downstream 109514 5652849 ~ 5727629 (+)
LOC113540863 kctd19 coding downstream 223553 5766888 ~ 5779071 (+)
mybpc3 mybpc3 coding downstream 459170 6002505 ~ 6046718 (+)
LOC113541027 NA coding downstream 466258 6009593 ~ 6009707 (+)
G360540 NA non-coding upstream 129066 5410427 ~ 5410647 (+)
G360442 NA non-coding upstream 489812 5048460 ~ 5049901 (+)
G360443 NA non-coding upstream 492051 5047176 ~ 5047662 (+)
G360433 NA non-coding upstream 593303 4946207 ~ 4946410 (+)
G360245 NA non-coding upstream 880355 4615154 ~ 4659358 (+)
G360590 NA non-coding downstream 111990 5655325 ~ 5655815 (+)
G360592 NA non-coding downstream 116850 5660185 ~ 5660502 (+)
G360597 NA non-coding downstream 121951 5665286 ~ 5665521 (+)
G360892 NA non-coding downstream 428329 5971664 ~ 5972079 (+)
LOC117596024 NA non-coding downstream 517694 6061029 ~ 6062571 (+)
fto fto other upstream 774827 4586607 ~ 4764886 (+)
cylda cyld,cylda,LOC107551493,LOC107657079 other upstream 1771999 3713652 ~ 3767714 (+)
cebpa cebpa other upstream 2239030 3245710 ~ 3300683 (+)
cilp cilp,LOC107670750,LOC107750479,LOC107554910 other upstream 2716375 2785627 ~ 2823338 (+)
igdcc4 LOC108259659 other upstream 2845426 2636289 ~ 2694287 (+)
lgr4 lgr4,LOC107700365,LOC107740414,LOC107554901 other downstream 787900 6331235 ~ 6404554 (+)
coro2ba coro2b,coro2ba,anp32a,LOC107755090,LOC107755092,LOC107663971,LOC107740437,LOC107700478,LOC107557695 other downstream 1402958 6946293 ~ 7005078 (+)
znf536 znf536,LOC107556245,LOC107696660,LOC107691894 other downstream 2421866 7965201 ~ 8140621 (+)
slc25a44b s2544,slc25a44b,slc25a44,LOC108438536,LOC107730245,LOC107698229 other downstream 3693854 9237189 ~ 9242763 (+)
serinc4 serinc4,LOC107701272,LOC107695356 other downstream 4727284 10270619 ~ 10291531 (+)

Expression


Co-expression Network