G395934 (LOC108260675,LOC107549207)


Basic Information

Item Value
gene id G395934
gene name LOC108260675,LOC107549207
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 11768905 ~ 11781667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU469368
cacacacacacacacacaggagctggTGTGGAGgagaacagaaacacacagAACCTGGTCACATTGATTGCTCGGGATTGATCGGGAAGGCTTCATAGACTGCCAGTCTCCTGTGCAGTTTAACAGCATCACATCTCTGAAAGCAGCTTTCTCGCTCATCACTTGCTCCACCAGGGCAACCTGGTCAAGCCCAACTGCGTGTGCTTCACCTCTCACCGTCTCGCCAATGTCAACCGCCACTCAACCCTGGCACCTGAACGGAGgtgtTGGTTTCCCATTCAATGAGGAGAGAGTCATGTCAGGTGGGGTGAACAGGAATTCAGCAATAATCGGAGGCATTATTGCTGTGGTGATCTTCACCATCCTGTGCACTCTGGTGTTCCTGATTCGTTACATGATTCGCCACAAGAGAACGCACCACACAAATGAGTCCAAAGAGGATGAGCACTCTGAATCAGCTGACACGGCTATCATCAGCACTGAGCCCAATTTCACCGAGACCATCGACGAAAGCAAGAAGGAATGGTTCATCTAACAGAATGGGGACATACATTACTTAAATAAGGATCAATACATACCCCCCTCCCATCTCTCTCCCTACTGTATgcgtacctgtctgtctctctctctctccccctctctgtctctctgtctttccctgTCCAGGAGTCCAGCTTCAATGTTTTCTAAAAGTGCAGCTGTTTACTGTATGCATGATAGAGCCAATGGGGGTGGGCAAGAACCAAGACCACAATGGGATCGATGACTGAAGGTCTGGCCGTCTTCTGATTCAGTTCTTATGGGGAAAATATGGAGCCTGAAGATTAGATGAGTGGGAATGTCAGACTGAAAAAAAGCACCCTCTTTGTTGGAACTAATCCAAATCTTCTCTGACCTCGTTAGACCTCTAGCTACAAAATCAAATCCAGAGGCCAGCTTTAGCTGTGGTTGGATTTAGAAACGTGCTGTTGAGATTGACGGAAACAGCACTACAATAATGAACTATATCAGCGATGTGTTCATGATCTATGCCAGCCAAACATCCCTAAGCAGCAATGGTGGAGATAAAGAGCCTTACAACTAGAGCAGTGCAGGAGGAATTAGCTGAGGGTGCCATTAAGAATGTGGCTAAATCTGACCAACAaaagcacaacattaaatacagcTTCCCATAAAGAAATGATAAACTACCACTCTCAGCTGAATCTCTTAGTCCATTTACACTGATATAGAACTgtcactttttttaaaccatcaGTTTATGAGCAGGGCCATTACATAATCAGATATATACATTCACTAATGCAAAGTTAAACCTAATAATAACTGGGGAGGGTTTTACAAGATTTACCTCGGATTGAAAATACACAATTAGTTTGTTGTCAACAACAATTCACTACagatatgcatttttattacttgtattaCTTTTCTGATGGATATTTTAGACcaaaatattattctttttttttccaaaaagaaaatgatataTGGCACAAAACACTAAAGGCTTATGGCACATGAGCAAAAGTAATGCATAAGATCCcagtattgtttttgtttttttgttttcttggtaTTTTCATTCTATATGTGCAGTCTATTCCATTCTATTGTGCAGTCTAGTCTTACAAATATATACAAGAGTATATAAactgtattaaattatttgtttccAAGACATGATAAAAGCCAAATTCCAAATAAGTTATAAGTAGCATTTTTGGGGTTTCCCGTGTGGAGTTCATGTTGCTGCTCACGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCACTGAGAATTTTCCACTATTATCGCTTGCCTGTCTGTGAACAATACCTTACGACAAGCCACAAGAAACAACTGACTGCTGCATATAATGCGTGCACTCTTATTTACTGGTCATCTGAAAACACCTGTGCTGGAAATACAGACATTAATTGTGCTACTTACCTTATGTCTCCTTCAAGTGAGTTTTCTACTATCTGAAAATCCTTAAATCCTTTCAACTATTGCTAGCTGTAATATCTGGGTCCTGTGCAAAAGCAGTCTCTAGCCTCTTTTCCGTTTCTCGAAAATGCAACCTTTTCAGTCTACTGCATTTAAAAGCCTCCTCCACTGATAGGGGCCCCGGGTAGTCAGTTCCACTTTTCTCTCTCCAATGATGACCCTGTTAATGGGtaagaaaacaacagcaaaaaatatTCTATCAAACATTCAAACTGGCTTTGTCATTAtgccctcaaccctgaccagtttatcagtctctcctGAAGAAAAGCATCCTCACGACATgatgccaccaccaccatgcttcactgtgtggaTGGTGTCTTCAGGATGAGTGAGAACCTTTTTCCACGTTTGCTGAGTTTCCAGCATGCCTTTTTCCGGAATGGATTTTAAATGTACTAATTTTTGCTGATTGCATTACATACACATGCTGTTTAAAGTTATTCTAAAGTTACTTTTTATGGCATTGCGGCGAGTTTGATGTGCTCTTACCGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCAGCAGTTTTTTCCACTATGGCAGGTTGCCTGCATGTGAACAATGCTGTACAACAAGCCACAAGAAAACAACTGGCTGCTGCACAGGACGTTAAGAGGGAAAAGCTAAGGTGGACACCCTTAGTTATTGGTCAGCTGGAAATAAACGTTTTAATGCTGCTACTTCCCGGATGTCTCTGTCAAGCAAGTTTTATACCATCTGAGTTAAATTCTCTCAGCTATTGCTAGCCATCAGACAGTTTTGTGCTAGGAACATTACTATGTTGCATGCCAGTAATATCTGGGTCCTGTGCAAACGCAGTCTATGGCCTCTTTTCCATTTCTTGAGTTTTGTTCTTATTTGCTGTGAACTCAACTAGTAAATCTTTTAGATTGTGAATGCCACACCCACGTTTGCGCCACTCCACCCATGTTGTGCAAATTTATGGTCATGAAAATAAtgactgaagaaaaaaagcaacatcCAAGCTGTGATATATGTGGATGCCAATTTTGCCAGCTCATATTCTGTGGAAAAGGGCAGAACACGTCCAGATACAGTAGCCATTGCAAATACAGTCAAAATGTTTGACTCGCTGTTTGTattctttgtgtgtctgttgtgtgttttttttgtttgtttgtttttttttgtaatcaacATATAAAATGCTGTAATAGTACTGATATACAGTAAGTTGGAGCAATGATATATCTACCTTTGTATGTACAGTCTTGAATATCTCATCTTCCCTGTCCCTATTTTGTcaagacaaattaaaaaaaaaaaggcccaaTGGGACAAACTGCAAAAAGTTACTGCAGAGTTACACAAAATTATAGTAAGAAGTACACACTGAGACTGGAACAAATGCACGTCTGTTCTCTCCATCCCCTTTCCTTGGCTTTTCTAAATGGATACTCAAGCACAACATCTCAATGAGGAATTGTTTCATGGGTCAGAATTTCAAACCCTGAAAAGAGACACATTAAGTCATTGTTACTCATGAATTCAGCATAGAATAAAGCAAAggattttgcttttttgctttgcttttaatCAATTCTTTTAAATATCATGAAGtaattctctatttttttttctttgctgttaatGGTGGCATTATTAGCCACTAACCTGACCATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU469368 True 3744 lncRNA 0.41 4 11768905 11781667

Neighbor

gene id symbol gene type direction distance location
clrn2 clrn2,LOC107746045,LOC107754181,LOC107702302,LOC107551567 coding upstream 8602 11756285 ~ 11760303 (+)
clockb LOC108260793 coding upstream 41293 11705579 ~ 11727612 (+)
tyrp1b tyrp1b,LOC107551586,LOC107702360,LOC107591533,LOC107656198 coding upstream 117025 11645551 ~ 11651880 (+)
si:dkeyp-118a3.2 NA coding upstream 124869 11635031 ~ 11644036 (+)
exosc9 exosc9,LOC107702358,LOC107591532,LOC107746036 coding upstream 241461 11520770 ~ 11527444 (+)
trnai-aau_23 NA coding downstream 723 11782390 ~ 11782463 (+)
trnai-aau_24 NA coding downstream 1023 11782690 ~ 11782763 (+)
trnai-aau_25 NA coding downstream 2142 11783809 ~ 11783882 (+)
trnai-aau_26 NA coding downstream 2749 11784416 ~ 11784489 (+)
si:dkey-245p14.4 LOC108260671,LOC108434314 coding downstream 4487 11786154 ~ 11790153 (+)
G395863 rbm47 non-coding upstream 108556 11656590 ~ 11660349 (+)
G395838 NA non-coding upstream 325039 11443645 ~ 11443866 (+)
G395818 NA non-coding upstream 356384 11411132 ~ 11412521 (+)
G395568 NA non-coding upstream 548840 11219854 ~ 11220065 (+)
G395474 NA non-coding upstream 793277 10975416 ~ 10975628 (+)
G395955 NA non-coding downstream 43244 11824911 ~ 11876241 (+)
G396314 NA non-coding downstream 595542 12377209 ~ 12379424 (+)
G396338 NA non-coding downstream 624812 12406479 ~ 12497688 (+)
LOC113544390 NA non-coding downstream 680854 12462521 ~ 12463044 (+)
G396380 NA non-coding downstream 765119 12546786 ~ 12555029 (+)
ptpn9b LOC108260905,LOC108434348,LOC107656769 other upstream 216363 11528553 ~ 11552542 (+)
prom1b prom1,LOC108434342 other upstream 365631 11352186 ~ 11403274 (+)
smim18 smim18 other upstream 503735 11261498 ~ 11265170 (+)
smim14 smim14,LOC107700293,LOC107757606 other upstream 863491 10897933 ~ 10905414 (+)
G395365 NA other upstream 1107202 10660946 ~ 10661703 (+)
G396005 NA other downstream 315304 12096971 ~ 12102765 (+)
LOC113547319 NA other downstream 1373609 13155276 ~ 13160354 (+)
zcchc7 NA other downstream 1465270 13246937 ~ 13292141 (+)
klf3 klf12,LOC106536821,LOC108260714 other downstream 1655945 13437612 ~ 13456819 (+)
LOC113547324 NA other downstream 1751314 13532981 ~ 13546963 (+)

Expression


Co-expression Network