LOC113544392 (LOC108260942)


Basic Information

Item Value
gene id LOC113544392
gene name LOC108260942
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 12414558 ~ 12417158 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943198.2
CTGATCAGGTAACCACCACaaggaagaaggagaagaagagtcTAGCGAGTGACGTCAAGTCAACATGGCTGCGCACTCCGTGAACAtCAGCGCAGGCAGTGAGGTGACTCTGATCCTGGACCCAGAGAAGAGCACGTTTCTCGGTAATGCTCCTCTGTACCAGTCAGCTGATGATCCCACTTCATTCTACCTTGATGAAGCCATGACTGTCAGAGTGAACTTGTATACTGCTGTAACCAAGCAAGAGGAGAAAGTGTACGTCGTGGATGCTGCACCCCTGCCACAAAATGAATCTTTTAGTAAAGAGCAAACCCTCTTTCTGATCGATTTGATGCGCCAGCAGTTGGAGGCAGACGGCGAAAGTCTCCTTCGAGCTTTAAAGGAGTTGAATCCACGAGTAAAGTCGGGTAAAAGCCGCAAAAAACATATGTGGAGGGAGATGGCTACTAGACTCTCCAAACACTTTAGGCAGGTCTTCCATCCTGATCATGTGGCGAGACAATGGTACACTCttgaaaatgaatacaaaaaggCGAAAGACGATAATAGAACAGCTAGTCAAGACACCGTGACGTTCCAGTTTTTTAGTGAGATGGAAGAGCTGTTGGGTGGGCATCATGACGTGGAATTTCCTGTCGTTGGCACGGTGAAAGGTGTAGAGGTGCGCAGGCCAAAGGCATTGAACGTGGACAGTGGAAGAGACTCGCCTGCGACTGCGCACACAGGGTCGGCTACGTCAGCAGCAACGCCAACGGCTTCAGCGACACCCACGCGAGCTCCTCTGCTCAAACGGAGGAGAACAGATGAGCACTATTTGGCTCTTCTGGACTTTTTAAAGGAATCTACGGCAGCTCGTCAGCGGCGCCACGAAGAAACTATGGCCCAGATGAAATCTGCTCAGGATGGGTTTGAGGCACTAATGAACAGATTCCTGGACAAAATTTGACCTTCTCTGTGCGTCCACAACACACAAACTGAACATTCAGCTCTGTTATTTCCTTTATacgttttttttgtgtgtgttttcttgctcATCTTTtgtgtatagtgtaatatagaCTGACTGgacaatgtaaaaaatattttatactgatttcgttataattttttttggtgCTAAAATCTACTCCCCATTTGAATTCCTGACCCCATTCTGAAAACCTGAAGTAAAGGAATTTACAAACTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943198.2 True 1188 mRNA 0.46 3 12414558 12417158

Neighbor

gene id symbol gene type direction distance location
ndst3 ndst3,LOC108260488,LOC108439183,LOC107551574,LOC107591550,LOC107702380,LOC107750457 coding upstream 42140 12302507 ~ 12372418 (+)
ugt8 ugt8,LOC107750420,LOC107656191,LOC107745064 coding upstream 236896 12143667 ~ 12177662 (+)
tll1 tll1,LOC107745060,LOC107548346,LOC107656041,LOC107591552 coding upstream 328539 12051954 ~ 12086019 (+)
cpe cpe,LOC107548348,LOC107745061,LOC107591555 coding upstream 380250 12015219 ~ 12034308 (+)
msmo1 msmo1,LOC107655978,LOC107745062,LOC107750426,LOC107702386 coding upstream 400697 12006791 ~ 12013861 (+)
mettl14 mettl14,LOC107754186 coding downstream 635 12417793 ~ 12426642 (+)
LOC113544289 zbtb5,LOC102302739,LOC102793543,LOC101469222 coding downstream 10500 12427658 ~ 12434597 (+)
uba6 uba6,si:dkey-82j4.2,LOC107551577,LOC107656020,LOC107591547,LOC107702375 coding downstream 22353 12439511 ~ 12456289 (+)
apbb2b apbb2,apbb2b,LOC107656070 coding downstream 46286 12463444 ~ 12506278 (+)
LOC113544326 NA coding downstream 123238 12540396 ~ 12550974 (+)
G396314 NA non-coding upstream 35134 12377209 ~ 12379424 (+)
G395955 NA non-coding upstream 538317 11824911 ~ 11876241 (+)
G395934 LOC108260675,LOC107549207 non-coding upstream 632891 11768905 ~ 11781667 (+)
G395863 rbm47 non-coding upstream 754209 11656590 ~ 11660349 (+)
G395838 NA non-coding upstream 970692 11443645 ~ 11443866 (+)
LOC113544390 NA non-coding downstream 45363 12462521 ~ 12463044 (+)
G396380 NA non-coding downstream 129628 12546786 ~ 12555029 (+)
G396389 NA non-coding downstream 171512 12588670 ~ 12595804 (+)
G396390 NA non-coding downstream 172459 12589617 ~ 12597218 (+)
G396572 ncapd3 non-coding downstream 421386 12838544 ~ 12887182 (+)
G396005 NA other upstream 311793 12096971 ~ 12102765 (+)
ptpn9b LOC108260905,LOC108434348,LOC107656769 other upstream 862016 11528553 ~ 11552542 (+)
prom1b prom1,LOC108434342 other upstream 1011284 11352186 ~ 11403274 (+)
smim18 smim18 other upstream 1149388 11261498 ~ 11265170 (+)
smim14 smim14,LOC107700293,LOC107757606 other upstream 1509144 10897933 ~ 10905414 (+)
LOC113547319 NA other downstream 738118 13155276 ~ 13160354 (+)
zcchc7 NA other downstream 829779 13246937 ~ 13292141 (+)
klf3 klf12,LOC106536821,LOC108260714 other downstream 1020454 13437612 ~ 13456819 (+)
LOC113547324 NA other downstream 1115823 13532981 ~ 13546963 (+)
G396887 slc25a4,LOC107656452,LOC107562743,LOC107092569 other downstream 1309486 13726644 ~ 13775822 (+)

Expression


Co-expression Network