XLOC_005786


Basic Information

Item Value
gene id XLOC_005786
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 8649266 ~ 8656457 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013558
CACACCACAACCCCCCTCCCCCTCACCTCCCTTCCTCCCTGTCAAGCGTGAGACAGCCTGGCACGGTGCTGAGCCCAGCCAAGAATGGAACTCTTAGTCGCCTCACGCAATGTGGTGTGCTGAAATTTCCTGCATAAAAGCCTGATTGGGAAGACacccattttaaaaaatgcaaagaaaaaagtaCCAGACACAGCAGCATGTGAAAATGAGGATCTACGGGACGGGGGACATGCCGAGGGAAAACCCCCTAACCCAAATCCCCTCTCCCCCCAAACTTTTTGACACTTTTTCCTCCATGTTTTCCTCAAATcctgttttaatttaaattttggcAAAGCTCCCTCTTACTCTGTTTCCCAAAGTTGTTTCCTGATTCACTCCCCCCCCTACCTCATTTCAAAATGATGTCATACACTCCATAGGTTAATTGTGGCTTGGCATGAGTGTGCAAAGGACAAAGTTCAGCAGAGATTTGGAAGAATATGGCACAAGGGGAGACAAAGAGAGCTGAAGGGAGCGAGTTACTAAGTGAGTTAGAAGCTGCCAAGCCAGTTCTGGTTCATAGGGAATTGCATATATGGTTGTTCTCTGCACAAGCACCCACAATCATGTCCTCAAACAGCTACATAGTAACTGCTACTATAATGAAGAATTTCTCAGAGcaagctaaaaaatatatataattttccaaCTATTCCTTTCTTCCTGTTCCTTTGGATTACATCTTCTGCATCTTTGTCTATGAATTCCACCTTTAGACCTTGTTTATTCAATAAAGTGTACatttacagtatgtacagtacttcattttttaaacatgacaGAACAGACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013558 True 835 lncRNA 0.43 2 8649266 8656457

Neighbor

gene id symbol gene type direction distance location
XLOC_005785 socs5b coding upstream 21228 8604710 ~ 8628038 (+)
XLOC_005784 CT030029.1 coding upstream 109885 8539267 ~ 8539381 (+)
XLOC_005783 galm coding upstream 331050 8306399 ~ 8318216 (+)
XLOC_005782 hells coding upstream 378548 8255106 ~ 8270718 (+)
XLOC_005781 CABZ01065679.1 coding upstream 493661 8131622 ~ 8155605 (+)
XLOC_005787 prop1 coding downstream 20709 8677166 ~ 8683552 (+)
XLOC_005788 ttc7a coding downstream 36953 8693410 ~ 8756048 (+)
XLOC_005789 epcam coding downstream 184315 8840772 ~ 8843363 (+)
XLOC_005790 thada coding downstream 236327 8892784 ~ 8953947 (+)
XLOC_005791 haao coding downstream 298210 8954667 ~ 8982782 (+)
XLOC_005780 CABZ01065684.1 non-coding upstream 625801 8011303 ~ 8023465 (+)
XLOC_005777 NA non-coding upstream 1176271 7469877 ~ 7472995 (+)
XLOC_005774 CT027980.2 non-coding upstream 1267633 7381518 ~ 7381633 (+)
XLOC_005807 BX511084.1 non-coding downstream 794369 9450826 ~ 9464509 (+)
XLOC_005817 BX248127.1 non-coding downstream 1217437 9873894 ~ 9874010 (+)
XLOC_005820 NA non-coding downstream 1494618 10151075 ~ 10302070 (+)
XLOC_005822 NA non-coding downstream 1605741 10262198 ~ 10266971 (+)
XLOC_005823 AL929457.2 non-coding downstream 1753305 10409762 ~ 10457446 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location