AMCG00000219 (LOC108424508,LOC106571088,LOC107668263,LOC105024336,LOC103359368,LOC106608156)


Basic Information

Item Value
gene id AMCG00000219
gene name LOC108424508,LOC106571088,LOC107668263,LOC105024336,LOC103359368,LOC106608156
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7325944 ~ 7336883 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000219
CAAGAACTCTATAATAAAACGTTAAACGTCCTCTATGAAGGGCCATGAAGAAGAAGAGCAAAAACAGAGTTCCAAAGATTGTCCCCTCTAGCTTGCCGTAATCGTCTGTAGTACCCGCCCCACTTTGCAGGAAACCGAAGGCAGAAAGACAAGTGATCTGGTATTGTTGACCAAGATTTGTTCAAGTGTTTGTCCAAATCAAAGCTGTCGTTTTCCACCCATATTGTCTGCTTTTATAATGGAGGATCTGGCTACCCCGTTGCGCTGTCTCAGTGACTTTCATAACGCGGAAGTGTTTACAGACGATAACGTGGAATCCGTGACTTCAGTTGAACAGAAAAAAGTGGAAGACAGTGTTCAGCAGGTGTTCAGATCCTACCAGGAAAATCACAGAATATTAGagcctACTTTACAGAGGCAACAGCACTACTCCTATTTGAAGAGAGGTTTACGATATCTTTCGGACGCTTATGAGTGTCTTGATGCCAGCCGTCCCTGGCTTTGCTACTGGATCTTGCACAGCCTTGAGCTCCTCGATGAGACCGTCCCCGCATCCATCGCCTCGGATGTCTGCAAGTTCCTGGCAAGGTGTCAGAGCCCTACGGGGGGCTTTGCAGGAGGGCCGGGTCAACATGCCCACCTGGCACCTACATACGCAGCGGTCAATGCTCTGTGTATCATCGGCACGGAGGAGGCATACGACGTCATCGACAGacCAAAACTACTCGACTTCCTGTACTCTGTGAAGCAGCCAGATGGTTCTTTCGTGATGCACGTGGGCGGAGAAGTGGATGTGAGAAGTGCGTACTGTGCTGCGTCGGTAGCATCCCTGACAAACATCATCACTACCACACTGTTTGAGGGAACCCCTAACTGGATTATCAGGTGTCAAAACTGGGAGGGGGGTATTGGAGGAGTACCTGGCCTGGAGGCTCATGGGGGATATACTTTCTGTGGAATGGCAGCCATGGTCATCCTTCAAAAGGAACATATGCTAGACCTCAAATCCTTGTTAcaCTGGGTCACAAGCAGACAGATGCGGTTTGAAGGAGGATTTCAGGGCCGCTGTAACAAGCTGGTGGACGGCTGTTACTCATTCTGGCAGGCCGGCCTTCTCCCTCTGCTGCACAGAGCCCTGTTTAAAGAAGGAGACACGACACTCAGTATGACCAGCTGGATGTTCGAGCAGCAGGCCTTGCAGGAGTACATCCTGCTGTGCTGCCAGAACCCAGCTGGAGGGCTGCTGGACAAACCGGGCAAATCCAGAGACTTCTATCATACCTGCTACTGTTTAAGTGGACTCTCAATAGCGCAGCATTTTGGAGGCAGCGAAATGCATGAGCTGATTTTAGGCAATGAGGAAAACCGACTGGCCCCAACCCATCCAGTCTATAATATCTGCCCTGAGAAAGTGGCTCAAGCTGTCCAGCACTTTCATCAAATGTCAGTCACTGGAAAGAGGGAGACCCCTTCCAACACTCCCAACCTTTCATAGatttcaaaagaaaactgcTATTCTTTGGTTGTaacagaaatcagaaaaaacTTATATGATGGCATCAGATTCCTGAACTTCTGGAAATATTTGCTCACCTAAAGTCTTCAGCTGTACATTTTAAGAGTTAATgaagggatttgttttttcttgaattGGTTGGGATCATATGAAAAGAAACTGACTTCAGTAGCATTGTCCATTTCTTTCTAGTTTGTATTACTAATAAACTTTTGGAATCCAGCTGTCTGTGTTCTCAATTCTGCAGTATTTTAGATgagtatttctttttaaatcaacaaaagCCTGATCTGAAAT

Function

NR:

description
PREDICTED: protein farnesyltransferase subunit beta-like

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0018343 protein farnesylation biological_process
GO:0005965 protein farnesyltransferase complex cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K05954 FNTB; protein farnesyltransferase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000219 True 1813 mRNA 0.47 12 7325944 7336883

Neighbor

gene id symbol gene type direction distance location
AMCG00000218 NA coding downstream 22007 7296829 ~ 7303937 (-)
AMCG00000231 NA coding downstream 57701 7261606 ~ 7268243 (-)
AMCG00000229 NA coding downstream 76592 7239764 ~ 7249352 (-)
AMCG00000230 NA coding downstream 100570 7212531 ~ 7225374 (-)
AMCG00000193 NA coding downstream 390757 6927997 ~ 6935187 (-)
AMCG00000212 LOC106531797,LOC108424513 coding upstream 245230 7582113 ~ 7585199 (-)
AMCG00000236 NA coding upstream 257376 7594259 ~ 7619197 (-)
AMCG00000237 zfyve1,LOC107721321 coding upstream 316560 7653443 ~ 7662995 (-)
AMCG00000222 NA coding upstream 349058 7685941 ~ 7689956 (-)
AMCG00000223 NA coding upstream 407698 7744581 ~ 7746668 (-)
G148801 NA non-coding downstream 184976 7140362 ~ 7140968 (-)
G148610 NA non-coding downstream 1177658 6147929 ~ 6148286 (-)
G148486 NA non-coding downstream 1614068 5711019 ~ 5711876 (-)
G148417 NA non-coding downstream 1870455 5455246 ~ 5455489 (-)
G148416 NA non-coding downstream 1871696 5451000 ~ 5454248 (-)
G148962 NA non-coding upstream 421799 7758682 ~ 7758963 (-)
G149002 NA non-coding upstream 619089 7955972 ~ 7956264 (-)
G149030 NA non-coding upstream 966936 8303819 ~ 8304215 (-)
G149068 NA non-coding upstream 1192184 8529067 ~ 8583456 (-)
G149075 NA non-coding upstream 1236199 8573082 ~ 8575086 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other downstream 762639 6556705 ~ 6563305 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other downstream 1109503 6214005 ~ 6216441 (-)
AMCG00000189 NA other downstream 1115987 6207514 ~ 6209957 (-)
AMCG00000168 gchfr,LOC106583112 other downstream 1171643 6150720 ~ 6154301 (-)
AMCG00000177 NA other downstream 1258760 6045665 ~ 6067184 (-)
G148851 gpx2 other upstream 24339 7361222 ~ 7362692 (-)
G149011 NA other upstream 759082 8095965 ~ 8106839 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other upstream 1689457 9026340 ~ 9045855 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other upstream 1833200 9170083 ~ 9188266 (-)
G149321 NA other upstream 2150996 9487879 ~ 9488609 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_06583304_06591407 FNTB coding CI01000325 null 6583304 ~ 6591733 (+)