AMCG00000243


Basic Information

Item Value
gene id AMCG00000243
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8788105 ~ 8814916 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000243
taaatagtgagACGCACATCAAATCCACTACTATACACTGAATACAACAGTTATGAGCAATTATTCGGACAAAACGTCTTTGCTCAGTCCCCCAGACAGCCCGGACAACAGCAGCGCGTCTGTCGGAGGCAGTGACTGGGACTTGGGCAacgatgtgtttgtgtgctgctaTGAGGAGCCCATGGGCGGAGAGCGGATACGGGCAGGGATGCACTCGGTACAGCCGGGTTTGGACCGACACCTGCCCCTTATCCGAGCCCGGCACCGGCCGTCCCAGGAGGGCTTGATTTTGGGCCTAGTGGAGGAGCCTTATGCCAGTTATCACCGCGGTTCCGACGCCAGCTCAGCCTACCTGGACGCCGGCGACCAGGACTACAGCGAGAGCGATGGCAACGTCGCCCCGCTGATGGAGACCAGGAAGCGGAACCGCTCCAGCAGCTCCCGGCACCGATACGAGGTCGTCACCGAGCTGGGCCCGGAGGAGGTGCGCTGGTTCTACAAGGAGGACAAGAAGACCTGGAAACACTTCGTGGGGCACGACTCTCTGAAGATCGAGGTCATGTATCGCAAGTTCTGCGAGTTGAACCCTAGCAAGGCCCGGCGCCTGGGGCCCAGGGGCTcggaggaaggggaggaggctgctgctgctgcggctgcTGCCGGGTCCGAGGCGTCCATCGGCGAGCCAGAAGGACTGGAGGAGGAGGGACCGGTGACCGTAGAGCCTCTCGCCGGGGGCCCGGGGGACAGAGGGGCCGAGGAGGGACCAGACACGGACGAGAGGGACCTGGATGCGATTGGCATCAATGTGGAACCGGTGTGTGTCAGAGGAGGCTTGTATGAGGTGGACGTGAAGGAGAAGGAGTGCTATCCCGTGTACTGGAACCAGCAGGACCGCATCCCGGTGATGAGGGGACAGTGGTTCATCGACGGCACTTGGCTTCCCCTGGAGGAAGATGAGAGTGACCTCATTGAGCTGGAACACCTGGGCTGCTTCCGTGGACAGCAGATGCAGGACAGCTTTGACACCGATATTGTGGCAAGGACAGTTGACAGCAAAGATGCCATTCACAGTCTAAAGCTGAGCCGCAGCCACGTGGACTGGCACAGTGTGGAGGAGGTATACCTGTACAGCGATGCCACCACCTCCAAAATCGCCCGCACGGTCACACAAAAACTAGGCTTTTCCAAAGCATCAAGCAGTGGGACGCGTCTCCACCGTGGATATGTGGAAGAAGCGTCCCTCGAAGATAAACCCCCTCAGACCACGCACATCGTGTTTGTCGTTCATGGCATCGGACAGAAGATGGACCAGGGTCGCATCATTAAGAACACTGGCATGATGAGAGATGCTGCACGGAAAATGGAGGAAAAGCACTTTTCCGACCGTGCTGCTGAGCATGTGGAGTTTTTACCCGTGGAATGGAGGTCGAAACTGAGTCTGGATGGAGACACTGTGGACTCCATCACTCCAGACAAAGTGCGGGGTCTGAGAGACATGCTGAACAGCAGTGCCATGGATATCATGTACTACACCAGCCCTCTGTACAGGGACGAGATCACGAAGGGCCTGACGCAGGAGCTGAACCGCCTATACTCACTCTTCTGCTCGCGCAACCCCGACTTCGAGGAGAAAGGAGGAAAAGTGTCCATCGTGTCGCACTCCCTGGGCTGCGTCATCACCTTCGACATCATGACCGGCTGGGACCCCGTGAGGATGTACCACCAGGAGCAGCAGGCACTGCAGGAGGACCCCCGGTGGCTGAGTTACGAGGAGCGACACTTGTTGGAACAGGTTCATCTCACGAGGCAGAGACTAAGAGAACTGGAAGATCAACTGCAAGGACTGGAGGCCTCAATGCCCTTGGCATCACCAGCCTTGAAGTTCAAGGTGGAGAATTTCTTCTGTATGGGCTCTCCGCTGGCAGTGTTCTTGGCTCTCCGGGGCATTCGGCCTGGGAACAACGGCTGCCAGGACCACATTCTTCCCAAGTCCATCTGCCAACGCCTCTTCAACATTTTCCATCCGACCGACCCTGTGgcTTACAGACTAGAACCTCTCATTCTAAAGCACTACAGCAACATTGCACCCGTCCAAATACACTGGTGTAACACTACCAACCCCACTCCCTATGACCAGATCCGACCCACCTTCATCAACCCCATTAAAGAGACTACCTCCGCCTCCGACACCGAGAGCATCCCCAGTCCCAGCACCTCGCCCGTTCTGGCCCGACGGCACTATGGAGAGTCCATTACCAACCTCGGCAAGGCCAGCATCTTAGGTGCGGCCAGCATTGGGAAGGGCATCGGAGGCATCCTGTTTTCCCGGTTTGCACGTTCCAGTAGCCAAGCATCGGCAGTGGAGGGTAGTGTGGCGGAGGGCGAGGACAAGAGGCCCGTGGACAGCCAGTCCTCCTATGGCCTCTCCAGCTTGTCTCAGTCCAGCTCCACCATCATCGAAACAGCACtggagCTGGAACATCGGATAGACTTTGAGCTGCGGGAAGGTCTGGTCGAGAGCCGCTACTGGTCTGCGGTGACGTCTCACACGGCCTACTGGTCCTCCCTGGACGTGGCCCTGTTCCTGCTGACTTTCATGTACAAGCAGCAAGAGTTACCAGAAgtaAAAGCGTGTGGTCAGAATATGGATATGATGAGGTCTTGGATATGGCGATGTGCTCAAGTTTCTGGAAGATGGATAATCCAAAcaaattcataaattattttcaaaacctgcTGGTCTTcctttttgtattgtgtatgttGTTCTGGGTGGCCAAAGATCTCCAAACTTACTTTGAGAAATCATACCTGCTAATAGGCTCTCGTCCATTTGTGTCCATTTTTATCACACAACTTCCAAAGCTTTTTCCTCCAGCACTCAGTAACTTATATTCTCCAAATCTCCTGc

Function

GO: NA

KEGG:

id description
K13619 DDHD1; phospholipase DDHD1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000243 True 2914 mRNA 0.56 14 8788105 8814916

Neighbor

gene id symbol gene type direction distance location
AMCG00000242 fermt2 coding downstream 16889 8751677 ~ 8771216 (-)
AMCG00000254 NA coding downstream 53557 8729285 ~ 8734548 (-)
AMCG00000253 stxbp6 coding downstream 101022 8668901 ~ 8687083 (-)
AMCG00000240 NA coding downstream 873673 7898317 ~ 7914432 (-)
AMCG00000239 NA coding downstream 895955 7886490 ~ 7892150 (-)
AMCG00000241 bmp4 coding upstream 38303 8853219 ~ 8863951 (-)
AMCG00000257 gch1 coding upstream 131747 8946663 ~ 8961375 (-)
AMCG00000265 NA coding upstream 148052 8962968 ~ 8977588 (-)
AMCG00000262 NA coding upstream 162708 8977624 ~ 8984923 (-)
AMCG00000264 NA coding upstream 173399 8988315 ~ 8989445 (-)
G149087 NA non-coding downstream 43606 8743871 ~ 8744499 (-)
G149077 stxbp6 non-coding downstream 48121 8669016 ~ 8739984 (-)
G149068 NA non-coding downstream 204649 8529067 ~ 8583456 (-)
G149075 NA non-coding downstream 213019 8573082 ~ 8575086 (-)
G149030 NA non-coding downstream 483890 8303819 ~ 8304215 (-)
G149125 NA non-coding upstream 36400 8851316 ~ 8851779 (-)
G149132 NA non-coding upstream 67732 8882648 ~ 8945588 (-)
G149268 pygl,LOC104938237 non-coding upstream 546416 9361332 ~ 9363435 (-)
G149322 NA non-coding upstream 675353 9490269 ~ 9490806 (-)
G149324 NA non-coding upstream 679243 9494159 ~ 9496132 (-)
G149011 NA other downstream 681266 8095965 ~ 8106839 (-)
G148851 gpx2 other downstream 1425413 7361222 ~ 7362692 (-)
G148692 LOC107756589,LOC107552947,LOC107682372,LOC100534413,LOC105015666 other downstream 2224800 6556705 ~ 6563305 (-)
AMCG00000190 cyp1c1,cyp1c3,cyp1c2,LOC107745367,LOC106610849 other downstream 2571664 6214005 ~ 6216441 (-)
AMCG00000189 NA other downstream 2578148 6207514 ~ 6209957 (-)
AMCG00000260 gpr137c,LOC107583456,LOC107693135,LOC107723581,LOC107564956,LOC107751764,LOC106610616 other upstream 211424 9026340 ~ 9045855 (-)
AMCG00000270 gbg2,gng2,LOC108239039,LOC106603227,LOC107569409 other upstream 355167 9170083 ~ 9188266 (-)
G149321 NA other upstream 672963 9487879 ~ 9488609 (-)
G149341 sos2 other upstream 725695 9540611 ~ 9541259 (-)
G149395 NA other upstream 941465 9756381 ~ 9766794 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011751 ddhd1a coding NC_007128.7 CM002901.2 50655619 ~ 50691398 (+)
grasscarp (Ctenopharyngodon idella) CI01000051_05379132_05400538 DDHD1B coding CI01000051 null 5378739 ~ 5401342 (-)