AMCG00000278


Basic Information

Item Value
gene id AMCG00000278
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9378563 ~ 9412332 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000278
AGGTGGGGGGTGCTGTGCTATGGGATGGACGAAGCCCAGCAGGACCAGTACGAGGCTCAACTGAGGGAAGTCTTTGACAGTTTCGACGCCAGTGGCTCGGGTTCCCTGTGCCAGGCAGAGCTCTCGGCCCTGTGCCAGGCCCTGCATCTTGAGGACGTGGCACCCACGCTTCTGCACCCCCTGTTGCCGCAAGAAGACCATCACACTGGCAGGGTTACCTTTGAGCAGTTCAAGGACGCTCTGATCCTTCTTTTATCGAACACTTTAGAAGGACACTCGCCAAACCAAGAGGACTGCGTTGAAGCAGACTGCACAGAGGTACACCCGAAGTTTGTGAAGGATGGTAAACGTTATGGCCGGCGGTCCACTCCTGAATTTGCGGACTCGATCACGGGGTTCTCTGAGGTCATCGACACAGGAGACCAGCCTGCGGACACCCAAAATGCCACGGGGCAGAAGGACCAGGAGcACCGGGACTATTCCACTCGCAGCATCGAGGAGTATGAAGCCGAAGGTCAGTTGCACCTCTGGAACCCCGATGACCCATGCACGCCCCGCGGAGGGTTGACTCCGTCGCCAGACTGGCTTGAGGAGCGGCTGCAGGGAGTGTGTGAGGCGCTGGGGGTGTCCTGGGATGGCTGTGCCAGCTCCAAGGatctgctctctgtgtgtgaacAGCTGGACCTGGAGGTGATGGAAGATGTTGTTCAGAAGCTGGACAGTGATGGGGTGATGAGTGTGCAGGACTTTGTGTCCAGGGTCCTGAACCACAGCAAGCCCCCTACTCCCTCTGCCTCCACCCCTTACCGACAGCTCAAGAGACACCACTCCACACAGGTTTCTAAATTTTATACTGTGTTGTCTGTTAAGCCGTTTGATGAGAGTGGCAGGCGGACCGCCACCCCATCGGCGATGACCAGCACCATCGGCCTGCGTCTCTTCTCCTTCCTGGACGATGGCTCGGGCTACACTGCTGCCGAGCGTTTACTGGATGCCTGGCAGGTGGAGGGCATCGAGAACAGCCCAGAGATCCTGGAAgctCTGGATTTCAGTATGGAGGGGAAGGTGCACCTGAGCGAGCTGACCATTGCACTGGAGAACGAACTCCTCATCACCAAGAACGGCATTCACCAGGCTGTGCTGGCCAGCTTCAAGGCCGAGATCCGTCACCTACTGGAGCGTGTGGACCGTGAGTTGCGTGAGAAGGAGAAACTACGCTCGGACCTGGAGAAGGCTGACAAGCTGAAGACCCAGATGGCCACCGAGGTGGATGAGCATCACTCTGCCATCGAGCGCCTGAATGACCACAACCTACGCAAACTGGAGCAGGAGCACAGGGACAGGCTGGCTGCGGTGCGGGCGGAGCTGACCCGAGACCTGGACCACATCCAGCAACAGGCCAGCTGCCAGCGGGCCGACCTGGAGAGGGAGGTGGAGAaggtgaaggaggaggaggcctTCCTGCGTGATCGCCTCTCGCTCACACTGAAGGAGAATGGGCGTCTGGAGGCGGAGCTGCTGGAGAACACAGAGAAGCTTGTGGAGAGTGAGAACCTGGTCAGCAAACTGCAGAGGAACCTGGACAACATTCTCAAAGAGAAGTTTGGTGATCTGGACCCGGGCAGCGCCGAGTTTTTCTTGCAGGAGGAGAGGCTGAAGAGCCTGCGCAGGGAGTACGAGGAGCAGTGCAGGGAGCTGCAGGACCGCATTGATGAGCTGCAGGTGGAGCTGGAGGAGTATCGCACCCTGGGCCGGACCACCAGGCCCTGCCTCAACCCCTCCCTGTCTGAGGAGTCTCGGATCGGAGGACTGCCCACCCTTCAACATGAGCCTGGAGGCAGAGATGCTGATGGAGCAGCTGAAGGACCAGCACCTGCAGGACGTGGAGATCCTCAGAGCAGAACTAGAGAGCAAGCACACGAGCAGGAGCAGAACCAACTGGCTCAGAGATGCAAGGAGGAGACGCAAGCTCTGCAGGAAAATTTGAGCCAGGCCCAGAGCCGAGTGACAGACCTGCAGGGGCGGCTGGATGCAGGCGAGACACAGCGAGAGAAGCTAGAGGAGTGCATTGCCACAGAGAGGGCCGAGCTGGAGAACCGGCACGTGAAGGAGGTCAGCGCCGTGAGGGAGGAGACCAGCTGCCTTCAGGCCCGCGTATGTCAGTTAGAGGAGCAGCTGAGAGATGCAGAGAGCGAGCGCAAGAGCATGGAGCAAACCCAGGCCTCCGAGAGGACGGAGCTGGAAAGGCTGCACTCCAAGGAGCGGGCCAAACTGGAACAACAACACGAGGAGGCACTCCAGGCACAGCTGGAGGCGGAGCGACAGAGGATGCTGGGGGAACAGGAGGAGCGGGAGCGGATGCTGACCGAGGAGTGGGAGAGGCAAAGGGCCTCACTGGAGGAGAGGCACCGGGAGGCTGTGCAGGAGCTGAACACAAaacagagggaggagagagagaggctgacgGGCCTGCTGGACAAGCTCAGGCAGGACACCGCAGAGGAAAGGAAAGAACTGGAAAACCACTTTTCCCAGAGGATCAGGGAAGTGGAAGCTCGTTTCTCAGGAGACCAGGTAGCTGTGTTGGAACAGTTCAAGGTGGATGTATCCAAGCTGGAGGAACGCTATCAGAAGGAGCTCAAGGATCTCTCCGAGCAGCACTTGGAGGAGAAGGCCCAGTGGGAGTTTGAGAAGGAGGAGATCCTCCAGGAAGGCGAAGAAGAAAGGGAGCATCTCCGGGAAGAGCTGGAGCGAGAGAAGGAATCTGCGTCCCTGGAGTTTGCCAATGAAAGAGACTTGATGGAGAAGAGCTACAAGGAGCAGTTAGCTAAAAATCAGCAGCTCCAAAAAGAACTAGAAGATCACATTAGTACTGCTCAGTTTAAGGATACTGAGCTCCGCAAGCAGCTGTCTGATCTACATAAAGAGCTTCAAACCAACTTGGAGGCAAAGGATTATCTTCTGATCCAAGCACAGAGGAAAGCTGAGGATCTGGACCTGCTGCTGCACCAGGCAGTGGAAGACTTTGAGCAGGAAAAGGTTGAGATGCAGGGTCAATTGACTGACCTTGAGGACAAGAACAAGAAGAATCTGACCCTGGTAGAGAAGCAAGTGGAGGAGAAAGAGGCTCTGGTGGCGGAAATCAGCCAGCTCACGGCTAAGATACAAGAGTTGGAGGCTGAGGCGGCTGAACTATCAAAACTTCGAGAGGACTTTGAAGAGTCCAAGAAGGAAAATGAAGAAGCTTTCTGCACAGTTTCACATCTCAAGAGAAGGATTGAAGAGCTTGAAGCTGAAACAGAATGGCTCACTAGCATGAAACAGGAAGATGAGAGAGATGCAGGAAATCTCAATGAAAGTATTATGACTCCTGGTGATGAAAGCACAGAATCTCAGGTCCCTGAGCTAAAAGACCTTCCTGATGACCTTGAAGCTGGTTTTCTTCAAGAGAAGCTCATCCAGCTGGAAAAGCAAGATGAACTGATTCCCCAACTTCTGGAAGAATGTGAACACAATGTAAGAGAGCATGACAGCTGCACTTGTGAGATGTTGGAATTATGTGAGAAAGTGAGCCAGTTGCAGGATCAGGCTTATATTACAGATGAGTTGCAGAGCCAGTTAGAATGTGTTAGCGAGCAAAACCTGGAGCTCAAAAAGCAGGTTTCCCAGCTTCAGGAAAGGACCGTTGAACTTCAAGATATATTGGAAGACAATAGCAAAAAGATTGCAACTGGAGAACAAGCAGAGAAAGAGAACAAGGCTCTCCGATTGGACATGTCTAAGATGATGGAATGGACCAAAGAGCTGGAGGACAAGGCCCTGCAGTTGATGGATCTTCAAAGCAGGTATGACGAATGCATCAGAGAAAAGAGCAGGTTAGAGGAGGGAAAAGTGCAGCTGGAGGGCAAAGTCCAAGATCTCGAGGAGAAGATGCAAGATATAGGAGACTTCCAGGACCAGCATGCCggatttgaaatggaaatggcCAGGATAACCGAAGAAAACTCCAAACTCTGCCTGCAGATCCAAGAGCTAAAGAAACAAGAAGAGGTGCTTAACAACCTCCGTCAGGACACGGAGAAGATTATGGAGGTAGCCGAATGGAAAGCCAAGAAGGAGACCTTTCATGAACTTAACTCGCAACTGGAAGCAAAGATCCAAGCCGTTTCAGAGCTGGAGGATAGCTGTGCTGTGTTTGAGAGGGAGAATACTGCTCTAAGGGACAATGTGACTGCACTCCAAGAGAAATCTAAAAAGTTAGAAGAAAAGATGCAAGTCCACAGAACTGAGGCTGGCCGTCTGGTAGAGGAGAATCTGATCCTGAAGAGGGAGATCTCCGCGCTCAAGGACGACAGGGACTTGTCCCAGGAGAAGCTGAAGGACCTGAGCGAGAGCCAGGGGGAGATGCAGCACAAAATCGAACACATTAGGAAGGAGAAGATGGCCGCTCAGAAGATGGCTGAGAACCTAAAGAAACAGGTGTCGGAGCTGCGCAGCCGAGGGCAGCAGCTGGAGGATGAGAATGGGCTGCTGTCGCACAAGAACGCCCAGAACGCGGCCGATGTGCTGGAGCTCAACCGCCGGCTGTCCGAGCTGCTGCGGCAGCgggagaggaaggagggaggcCGGCGTCATCACCTTCAGGGAGAgcttgagagggagagagcggcGCTGACCATGGAGCTGGCACAGGAAAGGAACAAGATGACAGCTCGCCTGTCAGGCCTGGAGAGTGAGTTGGCTGATGCCCAGCAGAGAAATACCCAAATGGAGCAGGAGAGGGCGCTGCTGAGTCAGAAGCTCACCACACTGAAGGAGCAGctGTGCGCTGAGAGGGACCTCGGCACCGAACTCGCCGACGCAGTGCTGAGGAGCGAGAAGCTGCAGAAGGAGAAGGACACCCTAAGTGACGAGCTGAGCCGCTGTGTGGACAAGGTGGCGAAGCTGGGAGCTGTGGAGAGCCAGCTGTCTCATCTCCGGCATGAGCGCCAGGCCATGGAGCAGCAAGCCCAGGGTCTCAGGACGCAGCTCTGCGCCTCTCAAGAAAAGGTCCAATCACTAGAAAACGCTCTACAGACCGTCAACCTGCAGAGTGCCCGGCTGAAGTCAGACCTGCGTGTGATCCAGCAGGAGAAAGAGGCcctcaaacaggaagtgatgtcacTGCACAAGCAGCTGCAGAACTCCAATGATAAGAACCAAGTCCTGGAGGTGGCGCTGAACTCCAGTGGGTTCCAGAACCAGCACAAGAAGCTGTTCTGGGATGAGCTGTCCCGGCTGGtggagcaggagcagcagctgcTGAGGCTGGAGAACGAGCGACTGCAGCAGGAGGTGCAGACCACCAAAGGGGACCTCAACCACTCTCGGGACAAGACTCGGCAGCTGGAGTCCACCATCCTGTCCCTGaagcagcagaagcagcaggGTCAGTCCAGCCTGGTGAAGGCCGTAGAGCAGGAGAAACTCAGCCTGAAGAGGGAGCTGGAGTCGCTGCGCAAGGAGCTGCTCATGGCCAACAGGAAGGCCAGTGATCAGAGCGAGGGCCAGAGGGAGCTGGACAGCCTGAGGCAGGAGAACGACAACCTGAAGACCCGGCAGGCCAGAATGGAGAGCCAACTGTTGGAGGCTCTGCAGGTGCAGTTGGGGGCCAGGGTGCCACGCGAGCAGTTGGTCCAGGCCCAGCACCGGCTGCTGCAGGCAGAGCGGCGAGGACAGCACCGAGGAGAGGAGTTGGCAGGAAGAGGCCCGGACATCAATCTGCAGCAGGGGGAACAGGAGGTGATGCTGCTCAAGATGGAGGAGCGCATGAGGGATGTGGAGCAGAAACTCCGCAACATCAAACTGCTGCTTCAGGAGAAAGTGGTCCAGCTGAAGGACCAGCTCCAGAAGAATGCCAAGGCTGACGAGATGATCAAGGACCTATATGTGGAGAACTCGCAGCTACTCAAGGCCCTGGAGATGACGGAGCAACGGCAGAAGGTGGCCGAGAAGAAGAATTACCTCCTGGAGGAGAAGATCTCGAGCCTCAACAAGATCGTGAGGGACCTGAGCCCCTCGCCATTGACTGCTGTGCCCTACCACTTCACACGCTCCTAACGCCTCCCAGAGCCGTCCTTTCTGAGCGCGCCGACACATACCTCAAAGCCCTGCCAATCTCATCCAAAAAGCCACCTCATCACAGCACCCCTGCCAATGTCTTTGCTTCTTCCTAATCCCACCAAGTTCTTCCACCCACTTTGTCCATCTTGTTGAATCTGCTTGAGCAAAACTATGCACAAAAGTGCCACCCATGACCCTTATCGTGGGTCGACAATCTGGTCTTTGGTGCTTATCAACTTTTCTATCATGCCATCACTTATGGTTGTAGTCCCAAACCATCTGTTGTGTGGAACATCTAGTTTAGTGATTCATGCATCTCAGAACTCGGGATTAAGTGGATTTAGTGATAACACtatcatgttttaatgtttatgatggtaagaaacaaaaaagaccgGTTGGATTCATGTGTGACAAATAacttgaaaagaaaagtataaatATCCAATTAGGTCTTAATTCTCcgccttttttaaatgaacatagCTGTTGGTGCAACAATTCTAAAGGGAAACGTTTTTTAAGCTTTAAGCcaccatttgaaatgttattttactttgagGTGTGGTAAAAGTGAAGTCAATATTGCCCAGTGTTCACAAACTATCTGAGTAAATACAAGATATCTACAATGTAATTGAAGGTGTCTTGTGAACATAGAAAACCAGTTACAATAGTTTTCCAATTGGGTAGGAGTTCTTATAACATAAACCACATGAATTATGCTTTTTACTGAAAGTGTTGCTTTATACTCCAGAGGTGCACTTGATACTGTCTAAAGAAATCAGTATTTTGACTGAAACTACCAGAGACTTGACACTGCCTCTCATTGTGCAAGTACTgtaactgctttaaaaaaaaaaagaatccttTCTTAACTTTACTTCCCTGGATTCCTGGGACACGTCGTTATTTGAGGTAAAATGagaatttgtgaaatgtaacatGACTTAACTCCTGAGAAGGACACTACCTGAAGCCGTTAATGCTTACCGTCTCATTGCCActaaaatatagttttgtaCAACGCTGCTGAAATTTCTGcttgtctgtgtatctgtgaataccttatataatatattatggtTTATTGTAAGCTTTAAATTCAGAtgtatatgaggtcttacatggAAATTGAACATACCAAGCTTGTCCATATCCAAAAGTGTCCAATGTCTGCTATGGAGTTGCTCCTCAGCTCCAGTCAGAAGCTGCACTTGCCGGCAATATTTTTCCATCTGTGACCTGTGATGTTAAATATATGCTTTCTGTCTCCAAGACATCCATTACATTTAGATTAGCTTTGGCCCAAGATCATCTGACACCTCGCAAAGATTTCATACATCATTTTATGGCAGACGGTCTCCATGGTTACACAACACTGATATAATCTAAAGTGATTTGAATTTAATCCGAAATGTCTGTGTTGTTAGGAATGTGTTTTTGGGACATGCAAAGGAAGTCAGTGTCATAAAAAAAGATGACCCTGCTATTAGGATCTGCTGCTGTGAAAGCCATTTCAGGGGAGGGTTTGTCATCAAACTAATGGAAAGCATATACGTTAGATAGCACCTTCATTCTCAACTAAGTAGCCTGGCAATTCCAGCAGGCTGTGGGACTGAAGAGACGCACATTTGCACTATGTTACTATGTTGTGtcaatatatacatagatatttttaaGGAACACTACTTTATATGATAATATCCTAATGAAGTGCTTGAAGCTGTTTTATGTCTGGGTGTGTGTGGACATAAGCAGCTGTGAGAGACTGTGAATAAGTGGATGTATGAGTACACCTGCCAAGAGGAACAGGTTAAGCACATTCTGTTTAGcctgaaattaaaaagtattttgctta

Function

GO: NA

KEGG:

id description
K16476 NIN; ninein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000278 True 7963 mRNA 0.52 29 9378563 9412332

Neighbor

gene id symbol gene type direction distance location
AMCG00000274 pygl,LOC104938237 coding upstream 15129 9355981 ~ 9363434 (+)
AMCG00000273 trim9,LOC102776798 coding upstream 23415 9331536 ~ 9355148 (+)
AMCG00000271 NA coding upstream 221621 9121065 ~ 9156942 (+)
AMCG00000266 NA coding upstream 298604 9035625 ~ 9079959 (+)
AMCG00000259 NA coding upstream 353836 9018662 ~ 9024727 (+)
AMCG00000277 LOC106517965,LOC107602930 coding downstream 2345 9414677 ~ 9427542 (+)
AMCG00000287 cdkl1 coding downstream 75585 9487917 ~ 9501368 (+)
AMCG00000288 l2hgdh coding downstream 89361 9501693 ~ 9508924 (+)
AMCG00000280 NA coding downstream 145186 9557518 ~ 9560476 (+)
AMCG00000283 NA coding downstream 276415 9688747 ~ 9705449 (+)
G149253 NA non-coding upstream 93412 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 362412 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 704777 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 793596 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 794556 8583648 ~ 8584007 (+)
G149359 LOC103376870 non-coding downstream 307615 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 545381 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 560716 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 609090 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 617362 10029694 ~ 10030786 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 793290 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 803439 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 2015856 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 2054112 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 2081598 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 27729 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 102490 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 149225 9561557 ~ 9591088 (+)
G149424 NA other downstream 556992 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1122258 10534590 ~ 10535137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_04981435_05004449 NIN coding CI01000012 null 4981435 ~ 5005112 (+)