G129071


Basic Information

Item Value
gene id G129071
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16889638 ~ 16892361 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU161844
ttcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcctCTGTGTTTCTTAAGCCCACGCCTGAGATCCCCAGCACCGGGTCCAACCCACCACAGTGTCACGTGTATTAATGATTCAAGGGAATCTAAAATAAGTGTcacaattattggcacccttgttTGGAAAACATATTGAAAGGAATCTTATACCATTCCTCCAGACAGAATCTTTCCAGATCCTTAAAATCCAGGGGTCTGCGCTTATGGACTGCCCTTTTCAATTTCAAACCAGAAGTTTTTGAGTCCAGAGACTGTGATGACCattgtaaaatgttgattttgtggCCAATTAACCATTTCCTTGTGGCTTTGGATGTGTTATTTGGGTCATTGTCTTGATGGAAGATCCACTTGCACCCAAGTTTCAGGATCCTGGCAGAGGCAACCAGGCTTCTGGCTGAAATGTCCTGGTACTTAGTAGAGGTCATAATGCCGTTGACCATAACAAGGGCCCCAGGACcagtggaagaaaaacagactCATAGCTTCAAAGATCCaccaacatattttacagtcggtatgaagtattttggagatgcctttatatataatacatttatgtacTTTCATAtttctgctttctttaaaatcaaGATTAAAAACAGGTTTTATGAAATGCAGCAAAAGAATGGTCGTGAAAGGTATAgttgaaacacaataaatatttattttgaaactgaaaaataactaatttactTTACAATAGATTGTAAACCCTCTTTAGAATAACAGCAATTATAACTGCTATTTAAAATACCCAGTGGATAATATCATACTGTGTATTGCTAATCCTAATGTAATACAACTATTTTTACCATATATGACCCACACaaaaatgcatgtcttttttctgatagagaaaacaCGTGGGTCTTAAACGGTCCATTCTGACATTAATTAACTAACATATTGCATATATACACTTTCAAACATatagaagaaaaggaaactcCAAAATTTGtgtcatctttaaaaaaaaaaaaaaaaaagtcttcataTACGTACTAACTCAGGGTTGTCTAAATTCTGATTTCAGAGGCCACAGTTTTCTACATTCCACATGTAACTTTAACTCAGCTGCTTAAATCTTGTATATGGGGTAAATTaacagttcagaaaataaacagagcaGCTAAATAATCCTACAACAACACTAAAGAAACTCTTAGGCCCTCAGAGACAGAATTTGGACAGCCCTGCACTAACCGATGCCGCAATTAAAACATCTGTGATTGTCACGGGGTTCAGAGCCCATCCAAAACCCATAGCAAAACATTacgatttttttgtttagttttttgtcagaAACATACCGGACATTAAACAGgcaaacaaacatagaaaacaaacatccaAGTCTTGCAAATTCAAGTCCAGACATCTACATAGATCTATTGTCCCTTACAATAATGGAAAAAAGGAGGTTGGGTCTGCCAATGTTGCCGTTTTATGTTGTCAATGTTAGCAAAACAGAGCCGGTATAAGAATATTGTATTCTTGGATGGttgctgcttttttaaataggtaagctgtaatttgctttgtttttgctccaaaatgtgaGACACCAAAGACAGAAAGGGAGATGACCAATGCTTAAATCTGTATCAACTAGGAAGCTCAGGTATAACTCAGATCAATACTTCCTGTTTGGGGAAATACATGGTCTTGGTCTCTATGTAAAATTAGATTTGGGTTGTATTTCTCTTTCCAAATCAGTATGCATCTGTTCTGGTTCGCACACATAAGCACAAGTGCATTCTCAAACACAAAGATCTTTTGAGCTCCGCAGCGAGCACGAACGTCTGCCTTTGGAATGTCACATTTTGGGGCAACAACATGTCTGCTGCCATGGCAACTGCCAACACCAGACAGGCCAGTTCCATTGCCAGTAGTTGCCACTCAGACAGAGGAAGCCCAGTTGAGCTTTCCACTGTCAAGCGTCAGTTCATACCGACTTAAGTCAGTTCTTGCAATCGTGGATGGATGAAGCCAATATATGAGAGCACAGCTAAATGGGCACACCCAATTAAATTTGGTACTGCTTGGTTCTTACAATACAACATTCTTCCAGTTGAATATTCAGAAATGTGAAATCCCATAAACTCTGaaagaaatctaaataaaacaacatttgcaGATTAATCTCTGAAAGTATACATTCAATATGTCAAAGAACTGCAATGTAGTTGAGCTGATTGGTGAACTGCTTCAGAAATTCAGTACGTGAAAATATATTGCTGCTATGTATAAATTGCATTGCTTTATTCAGTGTTTAAAGAACATCAAATCAGTAGTGTTTTCCAAATGTGTTTATGCTAAAGATTCAGGTTAAATTAAGCAGCATGCTTTCATTGCTGTCagatgtaattatgtaattaattgatAATGTGTGTTAAGCTGATcagattaatgttttaataaaatgggaAATGTAGCAGGTGACTATGGAAGTTGGTTGATTTTTGACCACTGGGGGTCTGTATTTTAGATCATCATGTAAAGGAGCGACAGATAAATATTATGCTACTGTTTTCTCTTGCACAGAAAATATGAACAAAGACTCATGAAGTAGTTCAAAAGGAAAGATAGACAATTCTTAAGGAAAACCATACTTT

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU161844 True 2671 lncRNA 0.37 2 16889638 16892361

Neighbor

gene id symbol gene type direction distance location
AMCG00001148 LOC103364251,LOC104945362 coding upstream 37274 16836498 ~ 16852364 (+)
AMCG00001146 NA coding upstream 315176 16542139 ~ 16574462 (+)
AMCG00001147 tns1 coding upstream 363316 16510249 ~ 16526322 (+)
AMCG00001141 NA coding upstream 535140 16346718 ~ 16354498 (+)
AMCG00001140 NA coding upstream 556725 16330869 ~ 16332913 (+)
AMCG00001149 NA coding downstream 46781 16939142 ~ 16972483 (+)
AMCG00001152 NA coding downstream 99237 16991598 ~ 16993031 (+)
AMCG00001157 LOC107389370,LOC101174306,LOC103461921 coding downstream 119501 17011862 ~ 17015601 (+)
AMCG00001153 NA coding downstream 159364 17051725 ~ 17121365 (+)
AMCG00001154 NA coding downstream 232967 17125328 ~ 17142987 (+)
G128958 NA non-coding upstream 827459 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 964828 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 967599 15921674 ~ 15922039 (+)
G128938 NA non-coding upstream 968064 15921373 ~ 15921574 (+)
G128919 NA non-coding upstream 1003036 15566401 ~ 15886602 (+)
G129080 NA non-coding downstream 251829 17144190 ~ 17147069 (+)
G129221 NA non-coding downstream 595031 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 799146 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 1079648 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1904489 18796850 ~ 18802040 (+)
AMCG00001114 NA other upstream 1425785 15460532 ~ 15463853 (+)
G128823 NA other upstream 1468758 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 1705246 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 4504596 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 4878213 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 1130699 18023060 ~ 18044251 (+)
G129453 NA other downstream 1653532 18545893 ~ 18547915 (+)
G129442 NA other downstream 1662790 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1995923 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 2150943 19043304 ~ 19142145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G715123 NA non-coding NC_048572.1 CM023226.2 47740097 ~ 47740323 (+)