AMCG00001147 (tns1)


Basic Information

Item Value
gene id AMCG00001147
gene name tns1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16510249 ~ 16526322 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001147
GGTTCATCAAAATCCTCCAAGAGTATGGAGTCTCGACGCAGACCTTCTCGGAGTCTGAGCATGATCCAGGCCATGGATGAGAGCTATGATGTGGATCTGGTCTACATCACGGAGCGCATCATCTCCGTGTCCTTCCCCAGCAGCGCAGAGGAGCAGAGCTACTGTGCTAACCTGAAGGAGGTAGCCACCATGCTGAAGTCCAAACACGGAGAAAACTACTTGCTCTTCAACCTCAGTGAGAGGAGGTTTGACATTACGAAGCTAAATCCAAAGGTGTTGGATTTTGGCTGGCCAGACCACCATGCCCCGGCACTCGACAAGATCTGCAGCATCTGCAAGGCAATGGACACCTGGCTGAACACCGACCCGCACAACGTGGTGGTGCTCCACAACAAGGGAAATCGTGGGCGGACTGGGGTGGTGGTTGCAGCCTACATGCATTACAGTAATATCTCAGCAAGTGCGGACCAGGCTCTGGACAGATTTGCCATGAAGAGGTTTTATGAAGACAAAGTGCTTCCCGTGGGCCAGCCATCCCAGAAGAGATATGTGCAGTACTTCAGTGGTTTGCTGTCTGGAaccatcaaaataaacaacaagcCACTATTCCTGCACCATGTGATCATGCATGGGATCCCCAATTTCGAATCCAAAGGAGGTTGCCGCCCTTTCCTCAAGATTTACCAGGCAATGCAGCCAGTTTACACATCTGGAATCTATAATGTCCAAGGAGACAGTCAAACCAGCATCTGTATCACCATTGAACCTGGTCTGCTTCTGAAGGGGGACATTCTGCTGAAATGTTATCACAAGAGGTTCCGCAGTCCCACCAGAGATGTCATATTCCGGGTGCAGTTCCACACCTGCGCCGTCCATGACCTGGGCATCGTTTTTGGCAAGGACGAGCTTGATGAAACTTTCAAAGATGACAGATTCCCAGAGTATGGAAAGGTGGAATTTGTCTTCTCTTTTGGGCCAGAGAAAATACAAGGCATGGACCATCTAGAGAATGGCCCCAGTGTCTCAGTGGATTACAATACCCAGGACCCCCTCATCCGCTGGGACTCCTATGAGAACTTTAACCAGAGATGTGAGGACACCATGGAGGGTAAGTGCTCTTtgtcaaaacctttttttttccttctttccttttAG

Function

symbol description
tns1 Enables RNA binding activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within cell-substrate junction assembly and fibroblast migration. Located in focal adhesion.

NR:

description
PREDICTED: tensin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001147 True 1155 mRNA 0.50 12 16510249 16526322

Neighbor

gene id symbol gene type direction distance location
AMCG00001141 NA coding upstream 155751 16346718 ~ 16354498 (+)
AMCG00001140 NA coding upstream 177336 16330869 ~ 16332913 (+)
AMCG00001139 NA coding upstream 198847 16306331 ~ 16311402 (+)
AMCG00001142 NA coding upstream 219950 16286440 ~ 16290299 (+)
AMCG00001138 NA coding upstream 224453 16276435 ~ 16285796 (+)
AMCG00001146 NA coding downstream 15817 16542139 ~ 16574462 (+)
AMCG00001148 LOC103364251,LOC104945362 coding downstream 310176 16836498 ~ 16852364 (+)
AMCG00001149 NA coding downstream 412820 16939142 ~ 16972483 (+)
AMCG00001152 NA coding downstream 465276 16991598 ~ 16993031 (+)
AMCG00001157 LOC107389370,LOC101174306,LOC103461921 coding downstream 485540 17011862 ~ 17015601 (+)
G128958 NA non-coding upstream 448070 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 585439 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 588210 15921674 ~ 15922039 (+)
G128938 NA non-coding upstream 588675 15921373 ~ 15921574 (+)
G128928 NA non-coding upstream 627950 15881355 ~ 15882299 (+)
G129071 NA non-coding downstream 363316 16889638 ~ 16892361 (+)
G129080 NA non-coding downstream 617868 17144190 ~ 17147069 (+)
G129221 NA non-coding downstream 961070 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 1165185 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 1445687 17972009 ~ 17976936 (+)
AMCG00001114 NA other upstream 1046396 15460532 ~ 15463853 (+)
G128823 NA other upstream 1089369 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 1325857 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 4125207 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 4498824 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 1496738 18023060 ~ 18044251 (+)
G129453 NA other downstream 2019571 18545893 ~ 18547915 (+)
G129442 NA other downstream 2028829 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 2361962 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 2516982 19043304 ~ 19142145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G60362 NA unknown CI01000009 null 15376260 ~ 15443047 (-)
rainbow trout (Oncorhynchus mykiss) G61889 NA non-coding NC_048565.1 CM023219.2 56495930 ~ 56496482 (+)