AMCG00001736 (bmp5,LOC106612672,LOC106589803)


Basic Information

Item Value
gene id AMCG00001736
gene name bmp5,LOC106612672,LOC106589803
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14285262 ~ 14304746 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001736
GTGGATGCAACCCTCTCTGCTCAGGGTGGGATGGACTATTGAGAACTACTGGTCTCTACACATGCCATGGGGATATCTTTAATTGAGCATTGAGATTGAAACGCATATGTAGATATTATTGAAccattttcttgcttttcttaTATATAACTCCTCATTTTGAGGGGCACATGTTTCCTCGGAGGTGTTCTGTGGCAGCTTTTGAGGGACGTACCTGCTCTGGATGAGGGCTGTGGAGATTGCAAGGTGGAAGAAGAGGACAGAGGGAAAGGATTGGGAATTGGGGCAGTTATTCTTTGATGAACTCTTCCCAGCACTGATGCATGAGGACTGACTGATATGCGTTAATGCGTCTTGGCTTTTGGGGGGATTGGAAACGAAAAGGATACCGTTTTCCATACTAGAAAGCACGGCGTTGCTCCGAGTCCTTGCTGGTGTGATGCATCGCTGAACAGGGAGATTTCTATACAAGGatcttgggggaaaaaaaaaaaaacctctggaAATGAAACTCGACCATGGTGAGACACTGAGGTAAAAGTTGGGAAAGGTCGGTCACAAGCGGCTGCACTGACATGAACACCTCCAGATAATACAGAATAACTGGACCATCTCAACGTGCTGAAAATGAAACTCTTACCCCTCCTCTGCCGAGCCACCCTGGGACTTTTGTGGACCTGCTGGGGGTTCCTCGACTGTGTGCAGTGTGGGCTGGGGGACAACCATGTCCACTCCAGCTTCATCTACAGGAGGCTGCGCAACCATGAGAGGCGAGAGATCCAGAGGGAGATCCTGTCCATCCTGGGCTTGCCGCACCGGCCCCGGCCCTTCTCCCCCGGGAAACAGGCTTCCTCGGCGCCGCTGTTCATGCTAGACCTGTACAACGCCATGTccacggaggaggaggacgggCTGCTGGAGAGGACCGGCCAGGGGACCCTCGGGAAGACCCGGGACAGTCTGCGCAAAGGGCACTACGCGTCCCCGCAGGGCTACTCCCGGGTGGCACAGTCGTACCGAGCGTCGCCCCTGGCCAGTCAGAGCCCCCCGCTGGCCACCTCGCACGATGCCAACTTCCTCAACGATGCCGACATGGTCATGAGCTTTGTCAACCTGGtGGAAAGAGATAAAGATTTCTCTCACCAGAGAAGACATTACAAGGAGTTTCGATTTGATCTCACTCAAATCCCTGATGGCGAGGCGGTAACAGCGGCAGAGTTCAGGGTTTATAAAGACCGCAGTCACTCTCGCTATGAGAATAAGACCCTGAAGGTTAGCATATACCAAGTCACCAAGGAATACCCAAATAAGGATGCAGACACATTCTTGTTAGACTCCAGAAAGATCAAAGCTTTGGATGGGGGATGGCTGGTGTTTGATATAACTGCTACAAGCAACCATTGGGTGCTCAACCCGGAACAGAATATGGGCCTTCAACTTTGTGTTGAAACAATGGATgGCCGAAGCATCAACATCAAATCCGCAGGTATTATTGGCAGAAACGGGCCGCAATCAAAGCAGCCATTTATGGTGGCTTTCTTCAAAGCCAGTGAAGTGCTCCTCCGTTCGGTGAGAGCTGCCAACAGCAAAAggaaaaatcaaaacagaaacaaatccgGTGGCCAAACAGATTACCCAAGAGGACCCAAGGGTGGTGATCAAAACACCAGTGAACAAAAGCAAGCCTGCAAGAAGCATGAACTTTATGTAAGCTTCCGAGACCTGGGATGGCAGGACTGGATTATTGCACCAGAAGGCTATGCTGCCTTCTATTGTGATGGAGAATGTTCCTTTCCACTCAACGCCCACATGAATGCAACTAATCATGCTATAGTACAGACGTTGGTTCATCTGATGTTTCCTGACAATGTACCAAAGCCATGTTGTGCGCCAACCAAACTGAACGCCATCTCGGTGCTTTACTTTGACGACAGCTCCAATGTAATCTTGAAAAAATACAGGAATATGGTGGTCCGGTCATGTGGCTGCCATTAAGTGGCAAAGAGGCGTATTGGTGGCATGACTGTCTTGAGATATGTGCTATTACTGGAAAACATATCAGTGGTATAGATACTTAATCTATGGTGTGATGTAcagtattatgtatatattagttCCATGTGCTTATTTATTATCCCTATTTTGTGATAATCCTTTTTTTCACCGTTTAAAATTGATCTTAAAACTCAATAGCGTCTTTAAAGAggtaatataaaacatatggaTTGTATTTAACCCTTTGTATAACTCGTTGCAGTTGTTTACACTAGCTACACCCGATGTTAACATGTGGTGCTTTCAAAATGCACAGAGCTCCGCTTAATACAAATACTCACCGTCTCCACAGTCGAGTCATGGAATATAGAAGTGACCAATTTAAGTCACTTACATAAGATTGAGAATGTTCGCTAGTATGTTTGAATTGTATGAAAAAGGATTTagcactttaatttaattcaagattaatggctgttttttttggaaataaacATTACTAGTATAATTATACGTATGAATTTTGGCCTCGTTACGTGCAGTGTCGGTCACCTGTTCTTTTCACACCCAAAGGCCATATTAACCTTACATTAACCACTCTTGCAAGGCTTGTGTTTGCTGCTACATTATAGAATGTATCTATGAAGACGTGAAAGGAAAACTGAAGATCTGTACGCCACCCTTAAAAAACGTTCAAAAACAGAATCTCCAGAGgtccagaaataaatatatNNNNCTAAATACTTGGGTCGGGGGGGggaagtaaaaacacaaaacccatTGTATTCAGTAAAGCGAGCTGTTAATTTTGATAGCACCACAGTTTATTGCTAAATCTACAGCTGATTATTTCACCAGAGAGAACCATATTGAATTCACCGCTCTGGTTTTTCAGTTGCATTGGAGAAGTTTAGAAGTTTATTCAAGGTTTACTTTTCCTGTGCAAACTTGGCAAAGCATTAGGTGCACATAAACAGAACGGTACTTGGAAGTTAAAACTACTACAGTCTGCATCTCAAGTGAtctcaagttatttttttaatagatctGTTCCATTAGACATTTGATTCTAATACTGTTTGCATTTAAGTATGCCCTTCAAACATCCAGTGTCTAAAAAAAAGCTAAGGAAATGCCATATGGTTATTTAAGTAGATTCTAAAGCTAAAAGGTTTTCAAggataaatatacttttttctctcgAATAACTGAAAGAGTCTTGGggtcaaaaatgtatttatgtttcagaattattttcCTACATATCTTGTGAAGGGATATGCAATCCTGTACGTCAAGACTTTCAATGTTCTCTCTATTGCATCTGTATAAAGAGGCAGTAATAATTACATGTTGTAACATTTGCTTAAACAAGAATACCACTTTAAAGATCCATGTCAGTTTCCGGGAtacaaagaataaacaaacaaaaataaaatgaacgtTTTACTTCCTAAAATAGAGCCAGTAGTGCACTCCATTGTGTGGATTTTTATATTTGACAAGCCACCTAcgtatttaaaaagaagaagacaTCTCTATAAAATAACATACAGGTAAATATGTCACCTGAGACTGTATCATACAATTAAatcttacaattaaataaag

Function

symbol description
bmp5 Predicted to enable BMP receptor binding activity and cytokine activity. Acts upstream of or within neural crest cell development; positive regulation of ERK1 and ERK2 cascade; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including neural crest; optic vesicle; periderm; pharyngeal arch; and sensory system. Orthologous to human BMP5 (bone morphogenetic protein 5).

NR:

description
PREDICTED: bone morphogenetic protein 5

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04663 BMP5; bone morphogenetic protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001736 True 3606 mRNA 0.43 8 14285262 14304746

Neighbor

gene id symbol gene type direction distance location
AMCG00001745 NA coding upstream 11182 14273092 ~ 14274080 (+)
AMCG00001741 NA coding upstream 13071 14271353 ~ 14272191 (+)
AMCG00001738 NA coding upstream 22478 14225469 ~ 14262784 (+)
AMCG00001742 NA coding upstream 65460 14208042 ~ 14219802 (+)
AMCG00001739 dst coding upstream 81489 14079768 ~ 14203773 (+)
AMCG00001740 NA coding downstream 15740 14320486 ~ 14337875 (+)
AMCG00001746 klhl31,LOC107688788 coding downstream 168930 14473676 ~ 14482309 (+)
AMCG00001748 gclc,LOC107712340 coding downstream 178019 14482765 ~ 14494689 (+)
AMCG00001751 LOC107664697,LOC107712343,LOC107597698 coding downstream 192221 14496967 ~ 14518085 (+)
AMCG00001747 NA coding downstream 215294 14520040 ~ 14524268 (+)
G160024 NA non-coding upstream 17540 14267388 ~ 14267722 (+)
G159798 NA non-coding upstream 1408576 12785795 ~ 12876686 (+)
G159800 NA non-coding upstream 1474527 12799509 ~ 12810735 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding upstream 1605773 12676811 ~ 12679489 (+)
G159594 NA non-coding upstream 2637810 11625671 ~ 11647452 (+)
G160036 NA non-coding downstream 1279 14306025 ~ 14306260 (+)
G160107 NA non-coding downstream 220991 14525737 ~ 14526508 (+)
G160116 NA non-coding downstream 254020 14558766 ~ 14563369 (+)
G160129 NA non-coding downstream 324557 14629303 ~ 14632490 (+)
G160144 NA non-coding downstream 396388 14701134 ~ 14701456 (+)
G160026 NA other upstream 15072 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 1951562 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 3527404 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 3607408 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 4125436 10157734 ~ 10159826 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 1026874 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 1127591 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 1932516 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 2874848 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 3112605 17417351 ~ 17462934 (+)

Expression


Co-expression Network