AMCG00001751 (LOC107664697,LOC107712343,LOC107597698)


Basic Information

Item Value
gene id AMCG00001751
gene name LOC107664697,LOC107712343,LOC107597698
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14496967 ~ 14518085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001751
CCAAAGCCAGCCTGTGATTGGCCGCCTCTGACGCCCGATGAATGGGGTGATACAGAGAGCCGCTCAGCCCGGAGCGCCAGCCGCGCCAGCCTCTCCTCCTGCATCTGCCGCCGCCGCTGCTGCTGGGGTCGGCACCGGGCTCAGCCGCTTGCAATAGAGGGGCTGGGCATCCAAGGGCACGCATCCTCCCAGGCAGACAAAAACAGGGTTAAAATGGAGGCCATCAACCAAGTGACAAATGTGTATATCGATTCCTGGATGGGTCCAAGAGatCCCAGGGTTAGAGGGTGGTTACTACTTGATAACTATATCCCTACCGTTCTGCTTACATTGATGTACCTCACCATTGTCTGGATAGGACctaaatacatgcaaaataaGCAGCCCTTTTCTTGCAGGGGGGTTCTTGTGGTCTATAATCTTGGGCTAACGCTACTGTCTTTTTACATGTTCTACGAGCTTGTTGCAGGAGTATGGCAAGGACGCTATAATTTCTTCTGCCAGGATACGCACAGCGCAGGGGAAGCCGACACCAGGATTGTGAACGTGCTTTGGTGGTACTACTTCTCCAAGCTTATTGAgtttatggacacatttttcttcattttacgGAAGAATAACCACCAAATCACATTCCTGCATGTCTACCACCATGCCAGCATGCTGAACATCTGGTGGTTTGTCATGAACTGGGTGCCCTGTGGACACTCGTATTTTGGGGCCACCTTCAACAGCTTCATTCATGTGTTGATGTACTCCTACTACGGACTCTCAGCCGTTCCTGCAATGCGGCCTTATTTGTGGTGGAAAAAGTACATAACTCAAGGACAGCTGgtCCAGTTTGTATTAACAATGTTCCAGACTACCTGTGCTGTCATATGGCCCTGTAAATTCCCAATGGGGTGGCTATATTTCCAGATATGTTACATGATAACTCTGATCGCTCTCTTCTCAAATTTCTACATTCAGacctacaaaaagaaaggCGTTTCCCGAAGGAAGGACCATCAGAACGGCTCTGCTCTGTCGATGAACGGCCATTCGAACGGAGTGTCTGCGATGGAAAACCTAAAGCACAGGAAACAGCGAGCAGACTGATGTCCTACCAGTCTCACAATCTGAAAACTAGCACATGAAGAAAACTCATGCtaggaaaataattttaaaatgatcttaaTTCAAATTCTAGTTTATCCTAATATATACCCATTTAGACATAAAGCCAAAGCCATTTTAATCCTAAGGAATTGCCTATAGACAGTTTGTACATCAAACctgtttattattcatattgaaTCAAGGCCCATAATGGTTAGGGGGAACAATATCTTAATgtacatttccctttttatttatatatatatatataaaaacaaatagaccggtgtatttttccattttgcctGCCTGATTTCACATACAAATTAACCAAGAAGAGCCAGACACATTCTAAAATATAATTGACCTGTCAAATGCAAGATATCGGTGTGTCAATAgtctaattttaattaaaaacatatcccACATACCGTACAATTCGCCTAAGGTTTCCACTTAAATTGAATCAACGttatatacttttatacagAAGTAATTCATAAATATGCCCCTTGcctaaaatacatttagctCAAAGGCCGCTaattgatacaaatattttgggACCCTTAACACTTACTTATTAAGACCAATGCTCTCATTCATAGCTGTGTGTATTCATGTTGTAGTTACTTCCAGTATTGACTTCACATTTCAGCAGGTCTGTCCAATCGAAACTCGACGTAAGACATCCTAATTTGTTCGGGTCTGTTCTACGTTTGGTAAGGTGTTAATGGGAAAATTGAATTTATCAATCCTTATTTTCCCCCCAACATGCTGTGGAAATCAATATTGCTAAGCCACCAGAAAGCAGCTTAAAGAGTTTTACTTCCTGTACtacacaatgtttaaataatgtgcAAATGAATAGGgtagtatatttttttataggaaCTGAAATAATGAAGCTAGCCTCAAGCGATACCTTTAGTGGCTTAGGATCCAGTTTTGCCACAAAGCACACGAAAGACAGTTTACACGTCTCGAACGAAGGTTCAAAATAGTTAGCTCAGAATAACTAtagttaaaaacacaaatgtaatctAATATTAGTGCTATGTATTACTCATTACATTGTTTCACTCAGGAGATCAGTGGTCCTAGACTCATTACTGTAATAGCTGTACAGTGTCCTTACTAATGCATTTAGTGGAAATCATTAGCCTTACAATAGAAGAGTGGTTAGTGAATAGAATTGTAGGCACTTTGTTTGGCTCTAGAAATGCTTTAATGTACATTTAGAGATTTGAGTACAACTTGGAACGAATGAGGTAAGATGAGATGacagtttatattttaaagtaaagcaagcaacatgtttatatatataagtctGTTGATGCTGTCAAAATCACTAGTTACTGCAAAGTGTCCTCCTGTGTGAAGCTGGATGTTTGCCCTGCCCTttattgcaatatgaaataCTGCTGGTACTATTGAATGTACAGTGACATGGTCGAAACTGCTCACTTGAAAGAAAAGATGTTCCTGTCTAGCATTAAAGGACAGCAATACTGCATAAGCCATATATTCCCAATCAGTCAAGAAGTAGCACCCAAGAACAAAAAATCTGGTTTAATTCATAAACCAGTTTTCTTCTCTGCTTTTGTAAAATTAAGTTTCTCTGTGTTCTTTAACATCTCCCAGATCCATTGCAAGTCTCTAGTGTATAATTTAAAGTAATGGTCAATGCGTAGgattatataaattgttttattttgctttgaatcTTGATTTTAACAGctgtggatttattttcaaaatattttaaaatgtttgttttatattattattattattattattattattattattattattttggggtACAGTCAAGGGGGATCAATAAAAATACCCTAAAGAGTGTTTCAAGAGTTTCTAAACTCTTTGAGGTAAAccctgttatttatgatttctgAAGATGTATCCAATTGAGTGGGGACTTTTTTCTAAGCTAAAACATTTGGACCTCTTCCATTTCCACACTCTGTTCATTAGCCCATTTACATCACTGCACGGGAAGAAGAACGGCTGACATCTACAGGTGTGAATCACTGCAGTAAAGAAATCCAAGAAAGGAAATATAAACACCTGATCACTTACCTTTATTATGTGACTATATAAGGATTCTTGCCTTAATAGCTGATTAACTGTAGGTGCTCATTCTTTCTGtcccaaatgtttttttgttgtttttttgtggtaaaATAATTTGTTGTCAAAAACTGCATGCTATTGTAACACTTCATTTTAACAATGTTGTTTGCTTGTGGTACACATTTGCCTTAATACAGAACTGCAGAGGCCAGAGCAACATTACACGAAGTAGAAACGTTGTAAACCTGTGTAGAGATTTGAAAGCCATTATATTAACAGATTAGTGTCAACAAATATCTGATAGATCGTTAAAATGTTCATATGCATCAAACTGTAACATATCAGCCCTTGCAGCATAGCACTGGATTTGAAATCTTGACAAGCACtgttagatatatatatatataaatgtaatttttatttttttgtggtggaTCAACATATTATCATAgtcttaaaaacaatgtatccaAATAATGAATAGTAAATTGTGGACAAATTATTGTTCTTCTCCAAGGAAGACAAAACCCATGACATAGCTCGATCACGATTTTATAACACCCTAACAGTACTGTGACAGAAGGAAATACTGCTGTTATATAACTGTAATGtcattgtatttgaataaataaaaggcgTTAATGTCACACTAAACACTCCTGTTCTGGATTTTACAAGGTTAGAAGGGAATCCAGAGGAAGGGCACAGCAGATACAGTCTCCTGGACCCAAAGATGTTAATTGATCTCCCCTCTAATGGGACACTTAGCAATTATCACTCAGGGCTGAACTGAAATATTCAGTCCGCTGCAGTTTTCACAGAAAGCGTGGATCCGGGGCTTGTGCGAACATTTGGGATTGCCAGGTGTCATCATTTTGTACATCTcagtcatacattttaaacaacaacagGGATAGCCTTTAAGATGCTCCTGCACAATGTTGTTCAGGTTCTTTTGGCCAATGGTTTGACAAACTGTAATGAAGATGTGAACTTTGTGCCATTAAAACACGAACCACAGTTTCCTCTGCCTCTCGGCCACAATCACACACAGCTCCAGAAACTGCACTTCTGCTGTACTTGGTTACCAGTAACCATCCTACTCACCAGCCTCCCGGGAACAGCTCGTATTCATAGCACAGTCTCAGAGCTCCCTCCCTCCAGGCTCTGGGCACAATCTAGACTTATCATCATACTTCTTTGctctatatatctatacaaATTGGGCATGGCCTCCAAAGACAGATGAAGTGTACATGAGACACATTATGcaacaactaaaataaactatttcaaatcaaaCTGACACAAATAAGGCCCGACGCTCCTCAAAGCAGGTAAAAAGCTGTCAGtctgtaaagtatttttaaattaggagTTTGACCAGTAGATGGGGATGTCGAACTTTCCTGCACACCACATGGAGAGTCAGCGGAGCAGTGTGAACTGTTAT

Function

NR:

description
PREDICTED: elongation of very long chain fatty acids protein 5-like isoform X1

GO: NA

KEGG:

id description
K10244 ELOVL5; elongation of very long chain fatty acids protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001751 True 4651 mRNA 0.39 10 14496967 14518085

Neighbor

gene id symbol gene type direction distance location
AMCG00001748 gclc,LOC107712340 coding upstream 2278 14482765 ~ 14494689 (+)
AMCG00001746 klhl31,LOC107688788 coding upstream 14658 14473676 ~ 14482309 (+)
AMCG00001740 NA coding upstream 159092 14320486 ~ 14337875 (+)
AMCG00001736 bmp5,LOC106612672,LOC106589803 coding upstream 192221 14285262 ~ 14304746 (+)
AMCG00001745 NA coding upstream 222887 14273092 ~ 14274080 (+)
AMCG00001747 NA coding downstream 1955 14520040 ~ 14524268 (+)
AMCG00001749 ick,LOC106612589,LOC102778244 coding downstream 15791 14533876 ~ 14544447 (+)
AMCG00001750 NA coding downstream 26463 14544548 ~ 14569005 (+)
AMCG00001753 NA coding downstream 87422 14605507 ~ 14622603 (+)
AMCG00001757 csmd1,LOC107565077,LOC107717843,LOC107564890 coding downstream 203841 14721926 ~ 14797935 (+)
G160036 NA non-coding upstream 190707 14306025 ~ 14306260 (+)
G160024 NA non-coding upstream 229245 14267388 ~ 14267722 (+)
G159798 NA non-coding upstream 1620281 12785795 ~ 12876686 (+)
G159800 NA non-coding upstream 1686232 12799509 ~ 12810735 (+)
G159775 LOC102207824,LOC102800191,LOC107693914 non-coding upstream 1817478 12676811 ~ 12679489 (+)
G160107 NA non-coding downstream 7652 14525737 ~ 14526508 (+)
G160116 NA non-coding downstream 40681 14558766 ~ 14563369 (+)
G160129 NA non-coding downstream 111218 14629303 ~ 14632490 (+)
G160144 NA non-coding downstream 183049 14701134 ~ 14701456 (+)
G160200 NA non-coding downstream 884200 15402285 ~ 15417554 (+)
G160026 NA other upstream 226777 14269615 ~ 14270190 (+)
AMCG00001691 NA other upstream 2163267 12329979 ~ 12333700 (+)
AMCG00001645 NA other upstream 3739109 10747489 ~ 10757858 (+)
AMCG00001643 spred2 other upstream 3819113 10655187 ~ 10677854 (+)
AMCG00001630 NA other upstream 4337141 10157734 ~ 10159826 (+)
AMCG00001760 mpc1,LOC107725004,LOC106589821,LOC107693783 other downstream 813535 15331620 ~ 15334580 (+)
AMCG00001762 NA other downstream 914252 15432337 ~ 15439031 (+)
AMCG00001814 ryr2,LOC106456445,LOC108410403,LOC106906861,LOC101062804,LOC103129799 other downstream 1719177 16237262 ~ 16377860 (+)
AMCG00001841 NA other downstream 2661509 17179594 ~ 17182601 (+)
AMCG00001846 NA other downstream 2899266 17417351 ~ 17462934 (+)

Expression


Co-expression Network