G157373


Basic Information

Item Value
gene id G157373
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 2007320 ~ 2011467 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198198
tctgtctctgtgtgtgcatgagtgtgaatgtgtgttacatgtggggTGTTGCTGTGTTGGATTAGGGAGGGATGTTCGAGggttaattgtgtttgtgtggctcCCCCCGTGATTGGGTGGCTGGGAGTTGCCTGATAGTGGGATATATTAAGGGCGGGGTGACGCGATGCTCGGCGAGTTGCGTAAGGAGGTAGTTAATGAGACAGTCTGACCGTGTGCGGTTTATTGGAACCTGAAGGAAAAAGGGGAAAGTCGATGTACCTCTTTGAAACAATGAATAAACGccagtttgttttggaagatttcggtttcatttgctttttatttcaacagcgaCCATCAAAAGGCAAGGTCGCTACAATATgttaaaaattattataataattcatgAAAAAACAGATATGTGGCCCACTTATGAAAATCATTGCCCACTCCTGatttaaatgattgatttacCATAAATTGTCTTGTCTTCAAATGCCGTGCAGTCTTGCTGTGGTTTAGCGCATGCGCAGCGCAACAATAGCAACACGGGTGTGTTAAATTCAGAACTCCTCTCTCTCGCCTAGATTCCTGCCGTGCggtatacacacaaaaagcacagcTGTGGTAGAAGAAACTAACGTACCCCACTGTCCAGAATATGGACATGGGAAACTGACTatgaattatacaaaaatgtttgaatgaCTAGGGGGCACTCAGATTTAAGTAGGGGCCAGTGGCCCTGTGGTCCACCCCCTGGCTCTGCCCCTGTACATACTGGTCTGAagacagggctgtttgtgttacATACGCAGAAGTCGGGAAAAGTCAAGCTGTACATAATTTGTACTATGCCTATATGGCAGGGTAGATTAcggtatttttaaaaatctacaATATGTAATTTTTTCAGTAAGAATGGGAAGAACGCGAATATAATTTTTGTCAAAGTCTAGGCTTGGGGAGGTTTGCAGTCACGGTGCTGCAGTGCTGTAGCGGAAGAGCAGTGTGTAAATAACTTCCAGCCCAGTGTGTTGTCTCGGGTTAAGAAACAGGTTAATACAAACTTTGTGTCAAAGgagtaaaaaactaaacaaaaaaatcagcttaaatatatatgaaacattttgaaaactgtaataaaattaattaattatattaaatacaaaaataacaagatTCGAAATTATACTAGCTCCAAACAACAATTATAGATTTCTAAGGCACAGACTTGACTCCCGTTAGCTCAtgatcattaatataaaatcGCTGAGGTTCCTCTACTGCAGTGCGTGTAAGTGAACAGAGGACAGCAACCCTGCATATGAAGCAAACATGCAGACTGTACAGCCAACAGTCGAATttagtatacattattttgacaatAGGATTTCCATACTTTTCCCAGACTTACATTTTCCATACTTTTCCAGGTCTGGAAATCAGTCTTTTTATATTCCATACTTTTCCAGACCTGCGCAAGAAccctgaataataaaataaacacctgCAGATCCTAAAAGAAACCGGAAACTAAATGGAGAAGATGCTTGCAAAACTTTTCAGTGTCTCAAAACTAAACACCAGGTAAGTGGAACAATGCAACCATCATTCTACATATGAAAGGAGATGAAGAtaatctgaagaactataggcccattagtctacttcccaataattaaatgtatttacaaagataACACATTGCTTTCAGGACAcgcccaaccaagagaacacGCAAGAATTAGATGTGGATATAACACTATGaatcatatacaagttgtatGAGACATATTAGGAAAAATGCAGAGAATGAGCTTCCTTTGTGCCTGAGCTTCGTTCACTaggagaaagcatttgattcaatatatacaaactcagtcatcagggctctaagaaatcaaaacattgaggaaacctatgtaactcttattaaatatttacaatatttttacattaagaATCTGACTACACCAACAAACtgacaatatagatctgcaaaggagtatGTCAAAgagacaatctctccaaaacaaCTCTTTAAGAAGTTTTCAATACATTGGACTGGGAGGACAAGGGAATCAAATTATTTGAACAAACTTATGATTTGCTGATTAACATCACCAGATTTGCAAAAACACCAGAAAACTTTCAAGTCAGATGCAATTAAACTGTACTTTATAATGAGTAAAACTAAAgtttaacagctttttaaattctAAGAAATCATGATACTTAAAAGGTAATGGTTATGTGTACCTTATGAAATGAGCACGCTGTTCAGCACACTTTTCAACGTAAATCTACCTATTTGCCTGAGAAGTATTTGATTAATGCATTCTACCAGTGCCCAGAAACCTGAATGCAacaattatacagaaactgtggatgatagaaagaaaaatgtaaaagatgtatgcttggaattaGTGTTGTCACGATACCAAAATTTTGGTACCGGTACCAAGTCATACATTATGatcaggggataaaattaacatttttttggccactagccactgtgtctggtagaaggaaaaaaatataatttctaggaatgatgacagacagttgCGTCCTTTCCATCGGTCAATACGATGCATGCCAGCAAAGACGCAATGTAAACGAAGTGCacatttctcttcagcagaatctgcACTACGCCGCAAAAAATGCACGTATACCGCGGTGTTGAAAAAGTCACGgtttcaaaaccacaaaaatattCCGTGATACCGTTCCAGCGTCTCTAGTCTCGTCAAAGACGGAAAGTGCAGGAATCCCTCAGGTTGTGTCGTGTGCAGCGCAGAGAGTAACATGACCCCTCCCCTCCGGTTAGTGGGAGCAGTCAGTCACCTGTGTGTAGGATGGCTGAAGCAGGTGAACCCCTGGAACTTTATCCCCGTCAAAAAAGACCGTATGGGAATTTTTTGGGTACCGAAAACATTCAGTTGGCCACGGCTTGGAGGAGGAAGGACATCCAATTTGTAAGATGTGTTTAAGAAGAGAGGTTGCTATAGGAGGCAATACGATATGATATCCAATCTATGGGAGCATCACCCGTCACTCTTTGCTAAATTCAAGGTCTTGAAATGAACATTTGCAACAAGAGAGTTAGCGTGTTTAGCACTGGTGAAATAAATACTATTGGCTTGCTAC

Function

NR:

description
PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198198 True 3144 lncRNA 0.39 2 2007320 2011467

Neighbor

gene id symbol gene type direction distance location
AMCG00001394 NA coding upstream 113622 1722432 ~ 1893698 (+)
AMCG00001393 NA coding upstream 339617 1655576 ~ 1667703 (+)
AMCG00001388 NA coding upstream 369408 1632813 ~ 1637912 (+)
AMCG00001391 klc4,LOC108263390,LOC102210354 coding upstream 407333 1576221 ~ 1599987 (+)
AMCG00001389 NA coding upstream 471081 1507240 ~ 1536239 (+)
AMCG00001395 NA coding downstream 8856 2020323 ~ 2022140 (+)
AMCG00001399 NA coding downstream 45420 2056887 ~ 2058997 (+)
AMCG00001400 NA coding downstream 65286 2076753 ~ 2104545 (+)
AMCG00001407 NA coding downstream 200784 2212251 ~ 2218503 (+)
AMCG00001403 tmem178,LOC107691291,LOC105026821,LOC107751123,LOC107570655,LOC106564792 coding downstream 368777 2380244 ~ 2393334 (+)
G157361 NA non-coding upstream 110040 1897074 ~ 1897280 (+)
G157336 NA non-coding upstream 215793 1789391 ~ 1791527 (+)
G157327 NA non-coding upstream 295505 1708945 ~ 1711815 (+)
G157256 NA non-coding upstream 902804 1101909 ~ 1104516 (+)
G157247 NA non-coding upstream 1052346 954595 ~ 954974 (+)
G157461 LOC100846954 non-coding downstream 404049 2415516 ~ 2415966 (+)
G157473 NA non-coding downstream 494109 2505576 ~ 2505911 (+)
G157475 NA non-coding downstream 499769 2511236 ~ 2511757 (+)
G157477 NA non-coding downstream 506155 2517622 ~ 2517991 (+)
G157481 NA non-coding downstream 533396 2544863 ~ 2545145 (+)
G157369 NA other upstream 6392 1971881 ~ 2000928 (+)
AMCG00001392 NA other upstream 312334 1691676 ~ 1694986 (+)
G157196 NA other upstream 1418020 587975 ~ 589300 (+)
AMCG00001436 gng4 other downstream 1737087 3748554 ~ 3765362 (+)
G157781 NA other downstream 1863742 3875209 ~ 3880779 (+)
AMCG00001433 NA other downstream 2011330 4022797 ~ 4023910 (+)
AMCG00001430 srf other downstream 2033889 4045356 ~ 4062333 (+)
AMCG00001457 NA other downstream 2612000 4623467 ~ 4652000 (+)

Expression


Co-expression Network