XLOC_005928


Basic Information

Item Value
gene id XLOC_005928
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 21687228 ~ 21693578 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013593
GCTGACTGGtaaacaacattcttcaaaatcctTTTATATTCAGTATGAGAAACTATACTTGGATTAACTTGGGTGCAGATGTTTCTGAATCGCAAGTCCGAGTTCTTCTGGATCAACCGAGGCTCCATACACCTCCCAGGTCATTCCCTCAGCATCCCATTTCACCTCCCTCACTGGAGACTTTCGACTCTTTGACGTCTTCTGCTGGACTAGACACACTTCTGGGAAGACGTGCTGGGGAAGCTCTTTGGAGTCCTGACCCACCTGCACTCCTACATCTCTCAGGTCTTCTTGTGAGGTCATGGTACTCGCATCACTTGTCGTCTTTTCGTCCACCCATTGATGGGCGCCAACTGGACGCAATGGACCAGACCAAGAGCAGTCCATATTGCAGCAGCGGAGGAGTCGATTACCATCCAACCCAGTTTCGCTGACAGAGGAGATGAGCCGAGGAAGAGCAAGCAGGTTGCCTGTTTGTCCTTGGCCCTTGTAGCTCTCATCCATTCCTACCAAGTGTGGAATTAGTTGTGCTGGGGCAGGAATAGGTTGTGGGTGGCAATACGCAGCAAACGTGTCCTTGACAGCTCCATGGTGGAAGTGAGAGTTACAACAAACGGGCTTTTCAAATTTGGGGCAGGTAGACTCTGGAATGACTTCACAGATCTGAATGAAACTGTGTTTGGCTGGTTGAGTTGGGCTGCTCGACCCGCTGCTTCCAGCTCTGATGGAAGTGGTCACCGTGTTGCTTTGTTGAAGTGGCATGGCCTGTTTACACACTAAAGAAGGAAATGACTGCGCACAAACATCCTTCTCTCGTCCTTGGCAAAACAATGCGCCCATTTCACAGTAGAGAGGAGACGCTGCGGCATCTTTAAAAATCTGCAAGCTGTCAGAGTGGCTTCTTTGTATTGATAACAAACTGTGATCATTCAGGTCCTTATGCACCATCAGTGACCCACTACAGTCATGTTTATTCTGATGGCTCATTGGGTGTAAACACACACTGTCGGATACATGGGTCTCAGCAATGCGGTGGGGACTTGCATTGTGTTGATCAATCTGGCAATGGTTTAGGCGCTCTGTTGGGGCTTCACTGGAGCTATTCCTGAGCACATCTTCAGCTTTCAACTCTGATGAACAGCAGTCAGCTGTTACAAGGGGATCTGAGGGGATTGTTCCCACTGGTGGGAATGATATGGTGTGTCCAGCCTCTGCCATCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013593 True 1221 lncRNA 0.49 2 21687228 21693578

Neighbor

gene id symbol gene type direction distance location
XLOC_005927 mtg1 coding upstream 4352 21674445 ~ 21682876 (+)
XLOC_005926 sh2d4ba coding upstream 65372 21600946 ~ 21621856 (+)
XLOC_005925 NA coding upstream 268277 21418611 ~ 21418951 (+)
XLOC_005924 BX000463.1 coding upstream 827801 20856611 ~ 20859427 (+)
XLOC_005923 BX000463.2 coding upstream 884095 20707546 ~ 20803133 (+)
XLOC_005929 chchd1 coding downstream 74869 21768447 ~ 21776678 (+)
XLOC_005930 si:ch211-51a6.2 coding downstream 86397 21779975 ~ 21822894 (+)
XLOC_005931 zswim8 coding downstream 132518 21826096 ~ 21886312 (+)
XLOC_005932 ndst2a coding downstream 194636 21888214 ~ 22095934 (+)
XLOC_005933 BX649358.1 coding downstream 356605 22050183 ~ 22050309 (+)
XLOC_005920 NA non-coding upstream 1169924 20384123 ~ 20517304 (+)
XLOC_005936 BX649262.1 non-coding downstream 429512 22123090 ~ 22123205 (+)
XLOC_005937 BX649385.2 non-coding downstream 509946 22203524 ~ 22203638 (+)
XLOC_005944 BX005174.1 non-coding downstream 878365 22571943 ~ 22582480 (+)
XLOC_005921 NA non-coding upstream 1252738 20433053 ~ 20434490 (+)

Expression


Co-expression Network