XLOC_005944 (BX005174.1)


Basic Information

Item Value
gene id XLOC_005944
gene name BX005174.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22571943 ~ 22582480 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011749
GAACGCGCGGCATTTGCAAACACGTGCTAATGACGCAATCAATTGGAGACGCCTTTTCCCGCGAACTCATCTCTCCTGGGAGAGCAGTCTTTATAGGAAACAtgccctttgtcttcatgctgggATTAAGAAAAAACAGAAAGCGTAAAATACCTCAAGAGGATGCAGAACATTACATTTGTTGTAAAAGTGACAAACCTGCAAGTGCAATTCATCAACAATTACAAAGGAGGATGAGTTTTCACCACTGAAGCTTTATTCAGAGGGGATTTTGTTCTTGAGTACAAGTTTGGGTGCATGGATGCATCGAAAGAAGATGGGTCTTTTGGGAGACTTGTAAATGATGACCACAAAGCTCCTAActgcaaaataaaaatcatatctTTGCTGTGTGCAACATACTTCCAGGAGAAGATATAACCTACAATTATGGAGATTCTGGTTATGTCCCATAATGCTTCTGTCTTCTCACCTGCTTTGGACAACATGAAGATGAGTGATCCTCACAAACAAACTGAGCCACAACAGTCAGACAAAGCAAGAAGATCAGGGAATAAGACGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092065

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011749 True 563 processed_transcript 0.41 5 22571943 22582480

Neighbor

gene id symbol gene type direction distance location
XLOC_005942 ldb3a coding upstream 19256 22476742 ~ 22552687 (+)
XLOC_005941 opn4a coding upstream 107822 22421151 ~ 22464121 (+)
XLOC_005940 usp54a coding upstream 197907 22280983 ~ 22374036 (+)
XLOC_005939 myoz1a coding upstream 293528 22264914 ~ 22278415 (+)
XLOC_005938 synpo2la coding upstream 308158 22249636 ~ 22263785 (+)
XLOC_005945 sncga coding downstream 76673 22659153 ~ 22673166 (+)
XLOC_005946 zgc:193505 coding downstream 93322 22675802 ~ 22678102 (+)
XLOC_005947 SHLD2 coding downstream 115735 22698215 ~ 22715102 (+)
XLOC_005948 nfkb2 coding downstream 134886 22717366 ~ 22735547 (+)
XLOC_005949 NA coding downstream 154635 22737115 ~ 22741976 (+)
XLOC_005937 BX649385.2 non-coding upstream 368305 22203524 ~ 22203638 (+)
XLOC_005936 BX649262.1 non-coding upstream 448738 22123090 ~ 22123205 (+)
XLOC_005932 ndst2a non-coding upstream 476009 21888214 ~ 22095934 (+)
XLOC_005933 BX649358.1 non-coding upstream 521634 22050183 ~ 22050309 (+)
XLOC_005928 NA non-coding upstream 878365 21687228 ~ 21693578 (+)
XLOC_005951 NA non-coding downstream 257529 22840009 ~ 22841394 (+)
XLOC_005954 NA non-coding downstream 449617 23032097 ~ 23046869 (+)
XLOC_005957 CR356222.1 non-coding downstream 645051 23227531 ~ 23240577 (+)
XLOC_005959 NA non-coding downstream 806013 23388493 ~ 23410510 (+)

Expression


Co-expression Network