XLOC_005959


Basic Information

Item Value
gene id XLOC_005959
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23388493 ~ 23410510 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013597
CTGAATGCTGACGCGTATTAAGACTTCGAAAGGATGACTAAACATTAAGCAGGTACCAGTCGCTCTGTGAGCTGAGATGTGGTGAATTGAATCAGACTGGGCGCTTTGCAGTCAATATGTGGAGCGTACTGATAAAACCAATCAGTGAGAAGTGAGGGGGCTCCGTCTCATTTGGCTGAGGTCTGAGGAAGAGCTTATAAACACTTGCAGATGCCGTATGCCAAAGACCTTCAACACAGCTGATCTTGACAAAACATCACTGCTGGGCACAGATGACCACTGCGTATCCATCTTATCAAAATGAAAGATGAACAGTGTTTTATGAGACTGACTTCAACGCTGGATTGATTCATTCAAAGGATGCAAGATccaagaagattttttttttcagagcacCTAAAATACAATACTGAAAGCATAATATGTATATACAGCATTATGATGCTAGAATCAACATAGCAATATAGGCATACTACACATTGTGGTGTAATATAAAGCTGTGTTGATCCTAACAATGTATAAAAGTTGACATAACCGCTAAATCCTTCTCACTCATAATGCTAGTCTGTAAAGTCTTGCATTTTTTGGTCATACAGTATATTCTCTTTGTGCTTAATCTTTTTATCCCACAGGACACAAAAAGAGACATAATTGGATTAAATGGCTGTTAAAGATGGAGTGTATTTGTCTGCGTTTATCATCTATGCTGTCATCTCAATGCTAAATGGGAAGGTTTAACATGATGCATTCAGTCTTGAAAGATATACAACCACCTGCAAGTAAATACATTTCTTTATGCCACACAAACAGTTTTGCCTGTGTTTTTGGAGTTATGGAAGCAGCTTGTTTCTGTGCTTTCTGCTACTGTGAcccaaaatataatattgtattttacgATATGTATACACAGCATTATGATGTTAGAATCAACATAGCACTACAAGCACACCACACATTGTGGTGTAAGGTGGTGTTGGTTGAAATAACAGCCAAATCCTTTTCACTCATAATACTAGTCTGTAAAGTCTAGCATTTTTGGTCATACAGATTATCCTTTTCTgcctaatctttttttttttatcccaaatgacaaaaaaaggaCATAATTAGATTAAATGGCTGTTAAAGGTGGAGTGAATTTGTCTGTGTATATAATCTATGGTCACCTCAATGCTAAATGGGAAGGGTTAACATGATGCATTCACTCAAGATACAGTAGATAACCACATGCAAGTAAATGCACAGCCATGTCCAAGattggttactcactgaagctaagcagggctgagcctggtcagtacctggatgggagaccacatgggaaaactaggttgctgttgaaagtggtgttagagaggccagcagggggcgctcaacctgtggtctgtgtgagtcctaatgccccagtaaaagtgaagggaacactacactgtcagtgggggccgtctttcggatgagacgttaaaccgaggtcctgactcctTGTAGTCATTTAAAATCTTGTAAAGATTAGGGATGTAGCCCCGGTGTCCTAGCCAAAgtcccttacaatcatggcctcccaatcatccccatccatcgaattggctccatcactgtttctccactcccccaatagctggtgtgtggtgagcacactggtgccgttgtcctgtggctgccgttgcatcatccaagtgaatgctgcacactggtggtggtgtaaagagacccccttcatgattgtgaagtgctttgggtgtacggccatacacaataaatgcgctatataaatacacattacattacattttattttctttatgccACACAAACCGTTTTGCCTGTGTTTAGTAGAAGCAGCTTGTTTTTGTGCTTTTTGCCACTGTGACCtaaaattcaatattttattttacaatatgtaTATACAGCATTATGATGTTTGAATCAACATAGGCACCACATCAATGTAATATAAGGCTGTGTTGATCCTAACGTTGTTTAAAATAACAGCTAAATCCTTCTCACTCATAATGCTAAAGTCTTGCATTTTTGGTCATACAGTATACCCTATTTCTGCTTAATCTTTTTATCCCACAGGACACAAAAAGATACATGATTGGATTAAATGGCTGTTGTAGATGAAGTGTCACCTCAATGCTACATGGGAAGGTTTAACATGATGAATTCAATCTTGAACTAAATGCGACCACATGCAAGCAAATACATACATTTCTTTATTCCGCACAAACagttttgcttgtgttttttcgGAGTTATAAAGCAGCTTGTTTCTGTGCTTTCTGCCACTGTGACATCTGTGAGCATATGACTCAGTTTGCTTTGCGTATGTCATTACAAGCAGTGTGAAAATACAGCACATATTACTCATCAGAACCTGTGCTGTCAAAGCCTGAGGCTTCAAAAAATTATTTatctgtcagtcagcacgtacaGAGACTTGTGAATTTCACACAATGGCTTGTTGTATGTAATGAAAATCCAGCCCCAGtttttttatgacaaacacaTTCTCATTAATGCTTGGGAGTGCCTCGGCTAAATGTGCTTTTTCTCCTTGCAGTGAAAATTTCAACACATCCAATCATGTTTTTGTAAGTGGCATTTTAACATTGTCTAAGTGCCCTTGAGGTTATCAGCGCAGCTCAGACTGAATTTTAAAATTCAATTTCCTTATGACTGTACCAATGAAACAACATCTGTCTGTCGGATTCAAAGTATGTCCCTGAAACCAATCAGAGGTTTGCACAGAACGGTCTCTATATTTTACAATTAagattttacatgcat
>TCONS_00013598
attccgctgtggcgaccctgtattaataaagggactaagccaacaagaaaatgaatgaatgaataaacaaggaATGTGCAAGAAAAAAGCGCTTTGCAGTCAATATGTGGAGCGTACTGATAAAACCAATCAGTGAGAAGTGAGGGGGCTCCGTCTCATTTGGCTGAGGTCTGAGGAAGAGCTTATAAACACTTGCAGATGCCGTATGCCAAAGACCTTCAACACAGCTGATCTTGACAAAACATCACTGCTGGGCACAGATGACCACTGCGTATCCATCTTATCAAAATGAAAGATGAACAGTGTTTTATGAGACTGACTTCAACGCTGGATTGATTCATTCAAAGGATGCAAGATccaagaagattttttttttcagagcacCTAAAATACAATACTGAAAGCATAATATGTATATACAGCATTATGATGCTAGAATCAACATAGCAATATAGGCATACTACACATTGTGGTGTAATATAAAGCTGTGTTGATCCTAACAATGTATAAAAGTTGACATAACCGCTAAATCCTTCTCACTCATAATGCTAGTCTGTAAAGTCTTGCATTTTTTGGTCATACAGTATATTCTCTTTGTGCTTAATCTTTTTATCCCACAGGACACAAAAAGAGACATAATTGGATTAAATGGCTGTTAAAGATGGAGTGTATTTGTCTGCGTTTATCATCTATGCTGTCATCTCAATGCTAAATGGGAAGGTTTAACATGATGCATTCAGTCTTGAAAGATATACAACCACCTGCAAGTAAATACATTTCTTTATGCCACACAAACAGTTTTGCCTGTGTTTTTGGAGTTATGGAAGCAGCTTGTTTCTGTGCTTTCTGCTACTGTGAcccaaaatataatattgtattttacgATATGTATACACAGCATTATGATGTTAGAATCAACATAGCACTACAAGCACACCACACATTGTGGTGTAAGGTGGTGTTGGTTGAAATAACAGCCAAATCCTTTTCACTCATAATACTAGTCTGTAAAGTCTAGCATTTTTGGTCATACAGATTATCCTTTTCTgcctaatctttttttttttatcccaaatgacaaaaaaaggaCATAATTAGATTAAATGGCTGTTAAAGGTGGAGTGAATTTGTCTGTGTATATAATCTATGGTCACCTCAATGCTAAATGGGAAGGGTTAACATGATGCATTCACTCAAGATACAGTAGATAACCACATGCAAGTAAATGCACAGCCATGTCCAAGattggttactcactgaagctaagcagggctgagcctggtcagtacctggatgggagaccacatgggaaaactaggttgctgttgaaagtggtgttagagaggccagcagggggcgctcaacctgtggtctgtgtgagtcctaatgccccagtaaaagtgaagggaacactacactgtcagtgggggccgtctttcggatgagacgttaaaccgaggtcctgactcctTGTAGTCATTTAAAATCTTGTAAAGATTAGGGATGTAGCCCCGGTGTCCTAGCCAAAgtcccttacaatcatggcctcccaatcatccccatccatcgaattggctccatcactgtttctccactcccccaatagctggtgtgtggtgagcacactggtgccgttgtcctgtggctgccgttgcatcatccaagtgaatgctgcacactggtggtggtgtaaagagacccccttcatgattgtgaagtgctttgggtgtacggccatacacaataaatgcgctatataaatacacattacattacattttattttctttatgccACACAAACCGTTTTGCCTGTGTTTAGTAGAAGCAGCTTGTTTTTGTGCTTTTTGCCACTGTGACCtaaaattcaatattttattttacaatatgtaTATACAGCATTATGATGTTTGAATCAACATAGGCACCACATCAATGTAATATAAGGCTGTGTTGATCCTAACGTTGTTTAAAATAACAGCTAAATCCTTCTCACTCATAATGCTAAAGTCTTGCATTTTTGGTCATACAGTATACCCTATTTCTGCTTAATCTTTTTATCCCACAGGACACAAAAAGATACATGATTGGATTAAATGGCTGTTGTAGATGAAGTGTCACCTCAATGCTACATGGGAAGGTTTAACATGATGAATTCAATCTTGAACTAAATGCGACCACATGCAAGCAAATACATACATTTCTTTATTCCGCACAAACagttttgcttgtgttttttcgGAGTTATAAAGCAGCTTGTTTCTGTGCTTTCTGCCACTGTGACATCTGTGAGCATATGACTCAGTTTGCTTTGCGTATGTCATTACAAGCAGTGTGAAAATACAGCACATATTACTCATCAGAACCTGTGCTGTCAAAGCCTGAGGCTTCAAAAAATTATTTatctgtcagtcagcacgtacaGAGACTTGTGAATTTCACACAATGGCTTGTTGTATGTAATGAAAATCCAGCCCCAGtttttttatgacaaacacaTTCTCATTAATGCTTGGGAGTGCCTCGGCTAAATGTGCTTTTTCTCCTTGCAGTGAAAATTTCAACACATCCAATCATGTTTTTGTAAGTGGCATTTTAACATTGTCTAAGTGCCCTTGAGGTTATCAGCGCAGCTCAGACTGAATTTTAAAATTCAATTTCCTTATGACTGTACCAATGAAACAACATCTGTCTGTCGGATTCAAAGTATGTCCCTGAAACCAATCAGAGGTTTGCACAGAACGGTCTCTATATTTTACAATTAagattttacatgcat

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013597 False 2790 lncRNA 0.39 5 23388493 23410510
TCONS_00013598 True 2778 lncRNA 0.39 4 23389975 23410510

Neighbor

gene id symbol gene type direction distance location
XLOC_005958 khdrbs2 coding upstream 359 23282549 ~ 23388134 (+)
XLOC_005957 CR356222.1 coding upstream 147916 23227531 ~ 23240577 (+)
XLOC_005956 sorbs1 coding upstream 162033 23132666 ~ 23226460 (+)
XLOC_005955 pik3ap1 coding upstream 256581 23093743 ~ 23131912 (+)
XLOC_005954 NA coding upstream 341624 23032097 ~ 23046869 (+)
XLOC_005960 il22ra2 coding downstream 212836 23623346 ~ 23630027 (+)
XLOC_005961 pcnx2 coding downstream 259149 23669659 ~ 23735251 (+)
XLOC_005962 CR352246.1 coding downstream 410676 23821186 ~ 23821300 (+)
XLOC_005963 oprm1 coding downstream 433202 23843712 ~ 23882977 (+)
XLOC_005964 sf3b5 coding downstream 487465 23897975 ~ 23901732 (+)
XLOC_005951 NA non-coding upstream 547099 22840009 ~ 22841394 (+)
XLOC_005949 NA non-coding upstream 646517 22737115 ~ 22741976 (+)
XLOC_005944 BX005174.1 non-coding upstream 806013 22571943 ~ 22582480 (+)
XLOC_005975 NA non-coding downstream 1160110 24570620 ~ 24572928 (+)
XLOC_005978 NA non-coding downstream 1187155 24597665 ~ 24649939 (+)
XLOC_005984 AL929005.1 non-coding downstream 1418243 24828753 ~ 24828869 (+)
XLOC_005997 BX530079.1 non-coding downstream 2033474 25443984 ~ 25444523 (+)

Expression


Co-expression Network