XLOC_005957 (CR356222.1)


Basic Information

Item Value
gene id XLOC_005957
gene name CR356222.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23227531 ~ 23240577 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011783
GTGGTTTTTAGCAGGTGTGGTATACTGCTATAAGGTTGTTTACACGAGTTAGTTGGCGCAAGCCGAAAGTACACAAGACTTCGCAAAATACACGGAAATAATGCGATAAAACCAAACGCTGCCACTGTTTGAGAGTGAAGAGTTCGATTGGATAGGCCTGTTTGAGATTTAGCTGAGACGCCAAAAGTGCAGGATGTCCTCTTTAACGGAGGCCCAGGCCATGCGTGGAGTGGTGAAGCTGGCGGTCCAGTCGCCCGTGGAGGACAGAAGGACAGCTCCTCCACATCCCTTCACCCTCTGGCTCATGTACTGCAGCGAGGCTTCAGCGGCGCCTACGGCTGATTTCCCTGCATTGCACAAGAAAACACTCAAGTATGTGTCAGTGTCAGCAAAGTTAGCAGCAGAACTTTATCTCCCTGCCATCCCATTTATTTTTGCTGTACTTTATCACAAGCATTTCCTGTCAGGCTTGTACATTGAGGATAAAATATAGAACTGCATAAATAGATGGTAGGGATTTTAAGGTTTAATAAGGCAGTAAAAATCGTATAATGCAGTAACACCTGTTACTGTCATAAACCAATGCGGTATTATCCACCATTATAAGGATTTTATTCACTATTCAATaagatattgttattattattattattattattattattttatattcaataaagTATCCTGAAAAAAGAAGTGTTTTCCCAAACATATTGAGCAGAATAACTATTACCCTTGAGCATCAGATCAGATTTTGAAATGATATCAGGAACTTCAGCTTTGCCAACACAAGAATaagttacaattttaaaaa
>TCONS_00011784
GTGGTTTTTAGCAGGTGTGGTATACTGCTATAAGGTTGTTTACACGAGTTAGTTGGCGCAAGCCGAAAGTACACAAGACTTCGCAAAATACACGGAAATAATGCGATAAAACCAAACGCTGCCACTGTTTGAGAGTGAAGAGTTCGATTGGATAGGCCTGTTTGAGATTTAGCTGAGACGCCAAAAGTGCAGGATGTCCTCTTTAACGGAGGCCCAGGCCATGCGTGGAGTGGTGAAGCTGGCGGTCCAGTCGCCCGTGGAGGACAGAAGGACAGCTCCTCCACATCCCTTCACCCTCTGGCTCATGTACTGCAGCGAGGCTTCAGCGGCGCCTACGGCTGATTTCCCTGCATTGCACAAGAAAACACTCAAacacatggtgcctgtcaattcggtggatggggaaaactcctacgtcacattgcgatgggcctcaaaatcactaggatttgaatcctattttaacgtcaggacatttaaaaaaaaagacacttgtgtttctatcaccccaATATAACAGTAGAATATACAT

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0048477 oogenesis biological_process
GO:1905516 positive regulation of fertilization biological_process
GO:0009566 fertilization biological_process
GO:0035803 egg coat formation biological_process
GO:0043902 positive regulation of multi-organism process biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0080154 regulation of fertilization biological_process
GO:0007281 germ cell development biological_process
GO:0007292 female gamete generation biological_process
GO:0007338 single fertilization biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0007340 acrosome reaction biological_process
GO:0009988 cell-cell recognition biological_process
GO:0003006 developmental process involved in reproduction biological_process
GO:0008033 tRNA processing biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0060046 regulation of acrosome reaction biological_process
GO:0035804 structural constituent of egg coat molecular_function
GO:0032190 acrosin binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093705

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011783 False 814 lncRNA 0.40 2 23227531 23235576
TCONS_00011784 True 532 lncRNA 0.47 3 23227531 23240577

Neighbor

gene id symbol gene type direction distance location
XLOC_005956 sorbs1 coding upstream 1071 23132666 ~ 23226460 (+)
XLOC_005955 pik3ap1 coding upstream 95619 23093743 ~ 23131912 (+)
XLOC_005954 NA coding upstream 180662 23032097 ~ 23046869 (+)
XLOC_005953 tacr2 coding upstream 256036 22964868 ~ 22971495 (+)
XLOC_005952 hnrnph3 coding upstream 354347 22863516 ~ 22873184 (+)
XLOC_005958 khdrbs2 coding downstream 41972 23282549 ~ 23388134 (+)
XLOC_005959 NA coding downstream 147916 23388493 ~ 23410510 (+)
XLOC_005960 il22ra2 coding downstream 382769 23623346 ~ 23630027 (+)
XLOC_005961 pcnx2 coding downstream 429082 23669659 ~ 23735251 (+)
XLOC_005962 CR352246.1 coding downstream 580609 23821186 ~ 23821300 (+)
XLOC_005951 NA non-coding upstream 386137 22840009 ~ 22841394 (+)
XLOC_005949 NA non-coding upstream 485555 22737115 ~ 22741976 (+)
XLOC_005944 BX005174.1 non-coding upstream 645051 22571943 ~ 22582480 (+)
XLOC_005937 BX649385.2 non-coding upstream 1023893 22203524 ~ 22203638 (+)
XLOC_005975 NA non-coding downstream 1330043 24570620 ~ 24572928 (+)
XLOC_005978 NA non-coding downstream 1357088 24597665 ~ 24649939 (+)
XLOC_005984 AL929005.1 non-coding downstream 1588176 24828753 ~ 24828869 (+)

Expression


Co-expression Network