XLOC_005952 (hnrnph3)


Basic Information

Item Value
gene id XLOC_005952
gene name hnrnph3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22863516 ~ 22873184 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011766
GTTCTCGCGAGATTGCGACTATCTGGACTGCTGGACTATCGTTCGGGGTTACCTGAGAGGACAGGCGCTTGACGACAGAGTCCTGACAAGGTAAACATGTCTCACAATGATGAAGGATATGTGGTGCGGATCCGTGGTTTACCTTGGTCATGTACACAAGAGGAAGTGGCCTCCTTTTTCTCTGATTGTGACATTGTAGGGAAAGTCAATGGGGTGTGTTTTACCTTCTCTAAAGAGGGAAGGCCGAGTGGTGAAGCATTTGTGGAGCTGAAGTCATCAGAAGACTTTAAAAAGGCTTTAGCAAAAGATCGCAAATATATGGGTCATCGTTATATCGAAGTGTTCAGGTCAAACCGTAGTGAGATGGACTGGGTGCTGAAACGTTCAGGTCCCACAGATTATGACGGCAGCAGTGGCTGCATGTTACGTCTGAGAGGATTGCCGTTCGGTTGCAGTAAAGAAGAAATCGTCCAGTTCTTTTCAGGGTTGAAAATCGTGCCAAATGGGATAACATTGCCGATGGACTACCAGGGGAGGAGCACAGGGGAAGCCTTCGTGCAGTTTGCCTCAAAGGAGATAGCAGAAAAGGCTCTGGGGAAACACAAGGAAAGAATAGGGCACAGGTACatagaaatatttaaaagcaGCCGAAATGAAATGCGCGCATACTATGAAGTACCGAGGAAGATTATGGGACAGAGGCCTAGTCCCTATGACAGACCCATGATGGGACGCGGGAGCTTCTTCGGGCCCGGGCCTGGAAGAGGAGGTGCTGGACTGGACCAGATGCGTGGCGGAAGCGGTTACAGTGGAGGATATGGTGGGTTCGACAACTACAATGGCTTTAACAACTACTGCTTTGATAATGGTATGTTCGAAGAGCGTGTGCGTGGTgacagaggaagaggaggaacgGGAACTCATGGTTACAGCAACGATTCAAACTCAGGCTTTCACAGTGGCCACTTTGTGCACATGAGAGGCCTACCGTTCAGAGCCACAGAGTCAGATGTTGCTCATTTCTTTGGTCCTTTAACCCCTGTAAGGGTGCACATTGATATGGGCCCCAATGGAAAGTCCACAGGAGAGGCAGATGTTGAGTTTAGATCTCATGAAGATGCAGTGTCTGCCATGTCAAAAGACAAGAATCACATGCAGCATCGTTACATTGAGCTTTTCCTGAACTCAACTTCGAGTGGGCCGTCTGAAATGGGCCGTGGAGGAGGTTTCTATAGCAGCTCTGGTGGGATGAGCTCTAGAGGAAGTGCATTAAGAGGGATGTTCTGA
>TCONS_00011767
GTTCTCGCGAGATTGCGACTATCTGGACTGCTGGACTATCGTTCGGGGTTACCTGAGAGGACAGGCGCTTGACGAGTCCTGACAAGGTAAACATGTCTCACAATGATGAAGGATATGTGGTGCGGATCCGTGGTTTACCTTGGTCATGTACACAAGAGGAAGTGGCCTCCTTTTTCTCTGATTGTGACATTGTAGGGAAAGTCAATGGGGTGTGTTTTACCTTCTCTAAAGAGGGAAGGCCGAGTGGTGAAGCATTTGTGGAGCTGAAGTCATCAGAAGACTTTAAAAAGGCTTTAGCAAAAGATCGCAAATATATGGGTCATCGTTATATCGAAGTGTTCAGGTCAAACCGTAGTGAGATGGACTGGGTGCTGAAACGTTCAGGTCCCACAGATTATGACGGCAGCAGTGGCTGCATGTTACGTCTGAGAGGATTGCCGTTCGGTTGCAGTAAAGAAGAAATCGTCCAGTTCTTTTCAGGGTTGAAAATCGTGCCAAATGGGATAACATTGCCGATGGACTACCAGGGGAGGAGCACAGGGGAAGCCTTCGTGCAGTTTGCCTCAAAGGAGATAGCAGAAAAGGCTCTGGGGAAACACAAGGAAAGAATAGGGCACAGGTACatagaaatatttaaaagcaGCCGAAATGAAATGCGCGCATACTATGAAGTACCGAGGAAGATTATGGGACAGAGGCCTAGTCCCTATGACAGACCCATGATGGGACGCGGGAGCTTCTTCGGGCCCGGGCCTGGAAGAGGAGGTGCTGGACTGGACCAGATGCGTGGCGGAAGCGGTTACAGTGGAGGATATGGTGGGTTCGACAACTACAATGGCTTTAACAACTACTGCTTTGATAATGGTATGTTCGAAGAGCGTGTGCGTGGTgacagaggaagaggaggaacgGGAACTCATGGTTACAGCAACGATTCAAACTCAGGCTTTCACAGTGGCCACTTTGTGCACATGAGAGGCCTACCGTTCAGAGCCACAGAGTCAGATGTTGCTCATTTCTTTGGTCCTTTAACCCCTGTAAGGGTGCACATTGATATGGGCCCCAATGGAAAGTCCACAGGAGAGGCAGATGTTGAGTTTAGATCTCATGAAGATGCAGTGTCTGCCATGTCAAAAGACAAGAATCACATGCAGCATCGTTACATTGAGCTTTTCCTGAACTCAACTTCGAGTGGGCCGTCTGAAATGGGCCGTGGAGGAGGTTTCTATAGCAGCTCTGGTGGGATGAGCTCTAGAGGAAGTGCATTAAGAGGGATGTTCTGAAGACCATCGCAAAATGCGCACTTTTCAACCCAAAGTTGGAACTTCCAGCTTGGAAGGTCTTTTAATATGAATATGTTTTACATGTTCCTATGAAAATATGCCCAAAATATTTTCCAAACTCgaagataattaaatttaatatacataatatgAGCTGTTGCATATATATTGACCGGCTACTGTACATTTTGCTTATTGAATTTTATATGACATATTCCGTGTCGAGTTCTATCTAAAGATACATGCTTTGTATGTATTTTAGCTCAGAAACTAGTATGAATAGCTTGATGCCCAagttgtgtgtgtttaaaattgcaattttatttaatttctcaaAGCAATAACATCATTTTGGATGTTTTACATGTCCTTGCTGCTAGGTACAAATTTCTAATTAAAACCTGTGAAATTTACACATCCCTGgaagaaaacattttattaataaatatatatttcagtttTCCCTGaagaatgtttattaaataaagttgTAATGCCAGAATAAAATGAGGTATCTGGCTACTGAACTGAATAAAATCAAATGGCATCAGCGCATTTCTATAGTATATTTTAAAGGAGTTGTGCAGCTCTAAACTACGGTTTTGTACCTTTAAAAAGACTGTGGTCAGTAAGAAATCTAATGTTTCTGAAAGTCTCACCAGTGgtgcatttatttgatgaaaaactatttattgtaatgtcatttatttctgtaatgGTAAAGCTACATGATCttgtataagcaaaataatctgacatgCTTTTTTTGTCCTTAATGTTGAAAACAGCCATTTTCCTGGAAACTATAAACATTTTTTCAGGGCTTTTTGAGgaacagaaaaatgaaaagtacagcatttatttttaacagaaatcttTTATATATGTCTGTTTGAAACTTCAGCCTAGTGTAATATTCTAAAGCATCAATAAATCAATTTGCTGAATCAGACTTATCCAATTTGAAAGTTCAACCTTTTTAGCAAGCAAAAGGgccaaaattataattttatttttttggaaaaatcaTGCTTAAAATGTATGAAATGATACATCAGGATTCTCAAATTCTTCATTGTATGAAACTGCATCATAATTTCCCCACAATGAAAACTGGAGCTTTGACGATAAAacgtttaaatattatatttgagGAATGTACTGTAtacatgtgctttttttttttttttttttgatagtttagGCCTCTGAATAAAAATGAGTTTTCCCCCTCTA
>TCONS_00011768
GCTGGACTATCGTTCGGGGTTACCTGAGAGGACAGGCGCTTGACGACAGAGTCCTGACAAGGTAAACATGTCTCACAATGATGAAGGATATGTGGTGCGGATCCGTGGTTTACCTTGGTCATGTACACAAGAGGAAGTGGCCTCCTTTTTCTCTGATTGTGACATTGTAGGGAAAGTCAATGGGGTGTGTTTTACCTTCTCTAAAGAGGGAAGGCCGAGTGGTGAAGCATTTGTGGAGCTGAAGTCATCAGAAGACTTTAAAAAGGCTTTAGCAAAAGATCGCAAATATATGGGTCATCGTTATATCGAAGTGTTCAGGTCAAACCGTAGTGAGATGGACTGGGTGCTGAAACGTTCAGGTCCCACAGATTATGACGGCAGCAGTGGCTGCATGTTACGTCTGAGAGGATTGCCGTTCGGTTGCAGTAAAGAAGAAATCGTCCAGTTCTTTTCAGGTACatagaaatatttaaaagcaGCCGAAATGAAATGCGCGCATACTATGAAGTACCGAGGAAGATTATGGGACAGAGGCCTAGTCCCTATGACAGACCCATGATGGGACGCGGGAGCTTCTTCGGGCCCGGGCCTGGAAGAGGAGGTGCTGGACTGGACCAGATGCGTGGCGGAAGCGGTTACAGTGGAGGATATGGTGGGTTCGACAACTACAATGGCTTTAACAACTACTGCTTTGATAATGGTATGTTCGAAGAGCGTGTGCGTGGTgacagaggaagaggaggaacgGGAACTCATGGTTACAGCAACGATTCAAACTCAGGCTTTCACAGTGGCCACTTTGTGCACATGAGAGGCCTACCGTTCAGAGCCACAGAGTCAGATGTTGCTCATTTCTTTGGTCCTTTAACCCCTGTAAGGGTGCACATTGATATGGGCCCCAATGGAAAGTCCACAGGAGAGGCAGATGTTGAGTTTAGATCTCATGAAGATGCAGTGTCTGCCATGTCAAAAGACAAGAATCACATGCAGCATCGTTACATTGAGCTTTTCCTGAACTCAACTTCGAGTGGGCCGTCTGAAATGGGCCGTGGAGGAGGTTTCTATAGCAGCTCTGGTGGGATGAGCTCTAGAGGAAGTGCATTAAGAGGGATGTTCTGAAGACCATCGCAAAATGCGCACTTTTCAACCCAAAGTTGGAACTTCCAGCTTGGAAGGTCTTTTAATATGAATATGTTTTACATGTTCCTATGAAAATATGCCCAAAATATTTTCCAAACTCgaagataattaaatttaatatacataatatgAGCTGTTGCATATATATTGACCGGCTACTGTACATTTTGCTTATTGAATTTTATATGACATATTCCGTGTCGAGTTCTATCTAAAGATACATGCTTTGTATGTATTTTAGCTCAGAAACTAGTATGAATAGCTTGATGCCCAagttgtgtgtgtttaaaattgcaattttatttaatttctcaaAGCAATAACATCATTTTGGATGTTTTACATGTCCTTGCTGCTAGGTACAAATTTCTAATTAAAACCTGTGAAATTTACACATCCCTGgaagaaaacattttattaataaatatatatttcagtttTCCCTGaa
>TCONS_00011769
GGTTTGGTGGTGTAGCCcttgttttacatgtttatttttcagACAGAGTCCTGACAAGGTAAACATGTCTCACAATGATGAAGGATATGTGGTGCGGATCCGTGGTTTACCTTGGTCATGTACACAAGAGGAAGTGGCCTCCTTTTTCTCTGATTGTGACATTGTAGGGAAAGTCAATGGGGTGTGTTTTACCTTCTCTAAAGAGGGAAGGCCGAGTGGTGAAGCATTTGTGGAGCTGAAGTCATCAGAAGACTTTAAAAAGGCTTTAGCAAAAGATCGCAAATATATGGGTCATCGTTATATCGAAGTGTTCAGGTCAAACCGTAGTGAGATGGACTGGGTGCTGAAACGTTCAGGTCCCACAGATTATGACGGCAGCAGTGGCTGCATGTTACGTCTGAGAGGATTGCCGTTCGGTTGCAGTAAAGAAGAAATCGTCCAGTTCTTTTCAGGTACatagaaatatttaaaagcaGCCGAAATGAAATGCGCGCATACTATGAAGTACCGAGGAAGATTATGGGACAGAGGCCTAGTCCCTATGACAGACCCATGATGGGACGCGGGAGCTTCTTCGGGCCCGGGCCTGGAAGAGGAGGTGCTGGACTGGACCAGATGCGTGGCGGAAGCGGTTACAGTGGAGGATATGGTGGGTTCGACAACTACAATGGCTTTAACAACTACTGCTTTGATAATGGTATGTTCGAAGAGCGTGTGCGTGGTgacagaggaagaggaggaacgGGAACTCATGGTTACAGCAACGATTCAAACTCAGGCTTTCACAGTGGCCACTTTGTGCACATGAGAGGCCTACCGTTCAGAGCCACAGAGTCAGATGTTGCTCATTTCTTTGGTCCTTTAACCCCTGTAAGGGTGCACATTGATATGGGCCCCAATGGAAAGTCCACAGGAGAGGCAGATGTTGAGTTTAGATCTCATGAAGATGCAGTGTCTGCCATGTCAAAAGACAAGAATCACATGCAGCATCGTTACATTGAGCTTTTCCTGAACTCAACTTCGAGTGGGCCGTCTGAAATGGGCCGTGGAGGAGGTTTCTATAGCAGCTCTGGTGGGATGAGCTCTAGAGGAAGTGCATTAAGAGGGATGTTCTGAAGACCATCGCAAAATG

Function

symbol description
hnrnph3 Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Orthologous to human HNRNPH3 (heterogeneous nuclear ribonucleoprotein H3).

GO:

id name namespace
GO:0043484 regulation of RNA splicing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-3878 Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Orthologous to human HNRNPH3 (heterogeneous nuclear ribonucleoprotein H3).

Ensembl:

ensembl_id ENSDARG00000039466

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011766 False 1287 mRNA 0.49 10 22863516 22871948
TCONS_00011767 False 2519 mRNA 0.39 10 22863516 22873184
TCONS_00011768 False 1588 nonsense_mediated_decay 0.43 9 22863545 22872417
TCONS_00011769 True 1132 mRNA 0.48 8 22865676 22871964

Neighbor

gene id symbol gene type direction distance location
XLOC_005951 NA coding upstream 22122 22840009 ~ 22841394 (+)
XLOC_005950 dna2 coding upstream 23749 22821647 ~ 22839767 (+)
XLOC_005949 NA coding upstream 121540 22737115 ~ 22741976 (+)
XLOC_005948 nfkb2 coding upstream 127969 22717366 ~ 22735547 (+)
XLOC_005947 SHLD2 coding upstream 148414 22698215 ~ 22715102 (+)
XLOC_005953 tacr2 coding downstream 91684 22964868 ~ 22971495 (+)
XLOC_005954 NA coding downstream 158913 23032097 ~ 23046869 (+)
XLOC_005955 pik3ap1 coding downstream 220559 23093743 ~ 23131912 (+)
XLOC_005956 sorbs1 coding downstream 259482 23132666 ~ 23226460 (+)
XLOC_005957 CR356222.1 coding downstream 354347 23227531 ~ 23240577 (+)
XLOC_005944 BX005174.1 non-coding upstream 281036 22571943 ~ 22582480 (+)
XLOC_005937 BX649385.2 non-coding upstream 659878 22203524 ~ 22203638 (+)
XLOC_005936 BX649262.1 non-coding upstream 740311 22123090 ~ 22123205 (+)
XLOC_005959 NA non-coding downstream 515309 23388493 ~ 23410510 (+)
XLOC_005962 CR352246.1 non-coding downstream 948002 23821186 ~ 23821300 (+)
XLOC_005975 NA non-coding downstream 1697436 24570620 ~ 24572928 (+)

Expression


Co-expression Network