XLOC_005975


Basic Information

Item Value
gene id XLOC_005975
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24570620 ~ 24572928 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013599
cattcaggAAATACCTAACCAGACTATCAGTTTTCAGTCATTGCTGAGGTCTGATTCCCCAGtctaatctgcaaaagacaaaaacaagacttgATCTCCAGCAATAAGCCAAATGTTCTCCAGCGTTCTTCAGATAAATATTCACCATTCCGCTTGTGAGGCTCTCTTTTCTGTCTGTTGTAGTTCCATTACctacaatgtaaataacagccacagaAAAGACATctatctatgcccaccaccacccccttcctcctGGAAGGACATCCATACATGCACCATCTGTGTGTTTCCCTGTTGCTCCACATGCTCCAACtgcaaagagaaagatatcaagtCTTCAATTAATCTTAATACATTGCTTTGGAAACTAACTCCATTGTTCAATCTGTTTAAGCAGTTCTACCTGTTTCCTgagccccaggtcttcaAGCATATCTCCTCCCTTTtgagtctccttcttctgctccacttcaatctgcaaaagacaaaaacagccCCAAGAAAGCCATACCTGCTCCTCTTCTGCCTGCTCTAtctccattacctgaaaaagaaaaacctcaCAAAGACAAGGCCTAATTCCTCATCCAAACTGATTGCCACTCTTCAATCTTGCAAGGACGTCCATCCATGCACCCATCgactggatttttaaaaaaatcctgaCCATCAATTTTCAGTcgttgctgaggtgtgtgattcccttTTTCTCCATGTGGTCCATTCCAATctgtaaaatacaatagaaagatATCAAGTCATTCATTTATCATAATACCATTTTTTTCAGCTGTGTCTCTATCAGTTCAGCTGTTGAGCTAAGCTCCGCCAATTCAATTGCCATTTAATTGGCCTGTTTTCTTATCTTCAGAAGTGATTGGTTGTCTGACGCACTCACCAAAAGTTTGTTTATCTACAGACACGCATCTCCATTCCCTATTCGGGGAACGTGGGTTAAGGACGTAACCAGGACAtttccagtcattgctgaggtgtgtaaTTGCAAAAGAAAACAAcaggactaacagagctctaTGTGATTGCTGAACTCCAGCAATGGAAGatgttctccagtgttcttcagataaatctcaACAGATGCTCTTGTGAGAGTGTCCTTCTGCCTGCTGTGTGTCCATTActcgaaaaaaa

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component
GO:0070469 respirasome cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013599 True 1155 lncRNA 0.42 2 24570620 24572928

Neighbor

gene id symbol gene type direction distance location
XLOC_005974 lgalslb coding upstream 16592 24552254 ~ 24554028 (+)
XLOC_005973 sertad2b coding upstream 46075 24500963 ~ 24524545 (+)
XLOC_005972 rab1ab coding upstream 158659 24402406 ~ 24411961 (+)
XLOC_005971 zgc:153169 coding upstream 168520 24396666 ~ 24402100 (+)
XLOC_005970 pdcd2 coding upstream 186815 24380132 ~ 24383805 (+)
XLOC_005976 echs1 coding downstream 6180 24579108 ~ 24582236 (+)
XLOC_005977 fuom coding downstream 11473 24584401 ~ 24586483 (+)
XLOC_005978 NA coding downstream 24737 24597665 ~ 24649939 (+)
XLOC_005979 msx3 coding downstream 89310 24662238 ~ 24664668 (+)
XLOC_005980 adam8a coding downstream 98553 24671481 ~ 24679636 (+)
XLOC_005962 CR352246.1 non-coding upstream 749320 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 1160110 23388493 ~ 23410510 (+)
XLOC_005957 CR356222.1 non-coding upstream 1330043 23227531 ~ 23240577 (+)
XLOC_005954 NA non-coding upstream 1523751 23032097 ~ 23046869 (+)
XLOC_005951 NA non-coding upstream 1729226 22840009 ~ 22841394 (+)
XLOC_005984 AL929005.1 non-coding downstream 255825 24828753 ~ 24828869 (+)
XLOC_005997 BX530079.1 non-coding downstream 871056 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 1197071 25769999 ~ 25782811 (+)
XLOC_006007 NA non-coding downstream 1371351 25944279 ~ 25961369 (+)

Expression


Co-expression Network