XLOC_005974 (lgalslb)


Basic Information

Item Value
gene id XLOC_005974
gene name lgalslb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24552254 ~ 24554028 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011808
atgttttcacacagaacaaatacattttatgtgGGGATATGCTCAGTTGCATTGCATAGTTGTAATTTTGTGCATACAGTTCTGAATGTTGGTTTTCTGCACAGCTTTGACATCAGTTTAACCTGTGGCCACAATGAGGAGAAAGAGGATGAAAAGCTCGCTGATGTGGCCCTTAAACTCAGCGCTCGATTCACTGAAAGGCAGTTCTTGAGGAACGCACGGGTTTCTGGGAAATGGAGTGAGGAGGAGGCACCCATAGCTTACTTCCCCTTCATCCCGGACCAGCCTTTTAGGATTGAGATCCATTGTGAGCACCAGCGCTTTAGGATCTTTGTGGACGGACACCAGCTGTTTGACTTTTATCACAAAGTAAAGTCTTTGCAGGCCATTAATATGATCCGGATAGTTGGGAGTCTTCAGATCACCAAACTGGGATAA

Function

symbol description
lgalslb Predicted to enable carbohydrate binding activity. Orthologous to human LGALSL (galectin like).

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-570 Predicted to enable carbohydrate binding activity. Orthologous to human LGALSL (galectin like).

Ensembl:

ensembl_id ENSDARG00000055525

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011808 True 438 mRNA 0.45 2 24552254 24554028

Neighbor

gene id symbol gene type direction distance location
XLOC_005973 sertad2b coding upstream 27709 24500963 ~ 24524545 (+)
XLOC_005972 rab1ab coding upstream 140293 24402406 ~ 24411961 (+)
XLOC_005971 zgc:153169 coding upstream 150154 24396666 ~ 24402100 (+)
XLOC_005970 pdcd2 coding upstream 168449 24380132 ~ 24383805 (+)
XLOC_005969 ccsapb coding upstream 258151 24287093 ~ 24294103 (+)
XLOC_005975 NA coding downstream 16592 24570620 ~ 24572928 (+)
XLOC_005976 echs1 coding downstream 25080 24579108 ~ 24582236 (+)
XLOC_005977 fuom coding downstream 30373 24584401 ~ 24586483 (+)
XLOC_005978 NA coding downstream 43637 24597665 ~ 24649939 (+)
XLOC_005979 msx3 coding downstream 108210 24662238 ~ 24664668 (+)
XLOC_005962 CR352246.1 non-coding upstream 730954 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 1141744 23388493 ~ 23410510 (+)
XLOC_005957 CR356222.1 non-coding upstream 1311677 23227531 ~ 23240577 (+)
XLOC_005954 NA non-coding upstream 1505385 23032097 ~ 23046869 (+)
XLOC_005951 NA non-coding upstream 1710860 22840009 ~ 22841394 (+)
XLOC_005984 AL929005.1 non-coding downstream 274725 24828753 ~ 24828869 (+)
XLOC_005997 BX530079.1 non-coding downstream 889956 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 1215971 25769999 ~ 25782811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12598963_12604426 LGALSL coding CI01000012 null 12597604 ~ 12605372 (-)