XLOC_005969 (ccsapb)


Basic Information

Item Value
gene id XLOC_005969
gene name ccsapb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24287093 ~ 24294103 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011800
AGCCTGACGTCTGCAGACACCAAGCGCCATCTGTTTACCTTCTCGTCCTTGCCTTAATCAAAACGtCGGACGACAAGTCAATATGGTGACCAAGCGAATTAGGTCGGAATACATGAAGAAATTTAAAGACCCGAAATGGGATACTTACGCAAAGTGTTATGAGGATTTGCTGAAGTACAGACTGTCAAGGCGGCTGCTGGAGCAGGCGCACAAGCCGTGGTTTTGGGGTGAATGGGGGAGCGAGACTGCTTCAAGTGGTAAATCTACTCCTCTGAGTCGGAATAAAGTTGAACCTTTGAAGACTCTTGATGAGAAACCTGAGCGATCTGCTTGTGTGACTCCAGAACCAGCAGCTGAAGCAGAAACACAGGCCGCAGAAGTGCAGGACAGAGAGCATGCAGACACCAATTTAGTTCCCTGTGATGCTGAGGTGGCTCATCCAGAAGGAGAGGAAGTAAGAGGCAAAGAACGCTCTCCTGCTGTCAACCCAGACTCTGACACACAGATCCAGAACATGTCAAAGAGCAAACGCCGCTCTTCACACAAGTACACAAGATCAAAGGTCAAACCTCAGGCCCCTAAAGACCCCGACAAAGAGAACCGTCACCCGTTTGCCCTGTATGGAGCAGGAGAGAAGCAGACTGACATGGCTTCAAAGAAAACACATAATGTGGGTCCTGCAGCTTCAACCGCAGAGATCCATGAGTCAGCGCTGCGAGCAAAAACCAGACGGGAGGTGGAAAAACAGATAAAGAGATTTGACAAGCAGAGAGCCAGATCTGCTGACTTGGAAAAGAGCAGAAATAAAATCATCCCCGATTTCAATCCCTGGATGACAGAGTACATGCGCTGCTTTTCTGCTCGCTCTCGGTAGTACCAATTCAGATATCGATTTTTTTCCAAACATCCGAGACCATCTAAACCTCTCAGGCTCCACATGACGACTGGCACATCGGTCCAGGTCACTCGCCGTCTTCCACGATGGAACTCGCAATGATTTAAACTCAGATTATAAGTCAAGGTTTTCAGGCGTTTATTTACATCAATGGATATGATGCATTTACTGGTACATATCAAACATGAAAACACAGTCCATTGATGCTGCAGGACAAACAATCACATGCCCTGATGCGTGAAAGTTGCGTAGATTTACAGGCCACGAGGTTTACCAGTGTCTCTTTACACTCTGAGCCAAACAGCAAATTAAAAAGTGTTCAATAATTGTCAGACGATTATCGAAACTCTATGTTGGTGTATTGTAATGTTGTATATTATTGATACTTTGTGTTTATATCAATTCGTATTTAGGAttaatgtaaagaaatctgttttgcACTTCACTGAAATCAATTGAGCCAACatttgtgttgttaaataagcAACACTTTGCTTCATCCATTATATTAATATCTGCTTTTTTTGATATGAGCTTTTCCTTGTACATTTACACCAATGGTGCGTTCCACCTTGTATTATATCAGAATATTATGTAATGTTCAGTATCATTATGTAATGTAAAAAGTCACCGGTATCTGAAGCATGAAACACGCAGCAAAATGACAAATCATGTTTGAATGAGAACATACACTGGAAAAGCAATTCCAGCTGTTTATCAAGCATATTTGTTTCCATTTATTGATGTTATTTAGGTTTTTTAGTAGCACTCAGGTATTTCTTGATGTATTTTGTGTAGTTTAATAATAGGAATGATGAGACTGGGATATTTGTACACTATTTATGTAGGGTTATTGAACAAATTTGGACTTATTTCCACTCACATGATATCTTTAAAGTCAGTTTTGGCTTGTGTTACGTActacagtgtttcccaaccacgtttcctggagggccgccaacactgcatgttttgtatGTCTCCTATGTCCGTCACAATACAGGTCTTTCAGTATttactaatgagctgatgatctgaatcaggtgtgtttggttttaGGAGAATTAGAAAATGTGCTGAGGTGGTGGTCGAGGAATgcggttgagaaacactgacataTAGTATTGACTTTGGTGTACTATTTAAGCCATAATGCTTCATTAAGAGGATGAACATATATTCTGATATGTGATTTGAATTTGAGGGTATTAAAGTTACTAAAACTGATATTTGTTTACATGAGATGGAATAAGTTTTGAAGCGCTTATATTATGAGGATCAAGATAATGGTAGTAAATGTGCCATTATGTTAAGTTTTAACACAATGCTGTTCCGAAGAAGTTACtgatatgttaaaaaaaatgacaaatgtgtTGGGTTATAATGCGTATTATTGATGTAAAAGTAGTTTTCATGTTCGTTTGTAGTTAAGGACAGCTTGTATACAGACCACCCATTTAAAAAAGACACTCTTTTCTGCCTAATGCACTAAACGTCAGATTTATACATCACAAATTCATTATAACATGCTGTTTTGGATACTGCCTACctgccaaaaataaaaaactgtttaaatgta
>TCONS_00011801
CGGAATAGACTTGCATAATTAGCTTGTTACTTCTCTACAATGTAACaagtctgtttttttctttgcagtCGGACGACAAGTCAATATGGTGACCAAGCGAATTAGGTCGGAATACATGAAGAAATTTAAAGACCCGAAATGGGATACTTACGCAAAGTGTTATGAGGATTTGCTGAAGTACAGACTGTCAAGGCGGCTGCTGGAGCAGGCGCACAAGCCGTGGTTTTGGGGTGAATGGGGGAGCGAGACTGCTTCAAGTGGTAAATCTACTCCTCTGAGTCGGAATAAAGTTGAACCTTTGAAGACTCTTGATGAGAAACCTGAGCGATCTGCTTGTGTGACTCCAGAACCAGCAGCTGAAGCAGAAACACAGGCCGCAGAAGTGCAGGACAGAGAGCATGCAGACACCAATTTAGTTCCCTGTGATGCTGAGGTGGCTCATCCAGAAGGAGAGGAAGTAAGAGGCAAAGAACGCTCTCCTGCTGTCAACCCAGACTCTGACACACAGATCCAGAACATGTCAAAGAGCAAACGCCGCTCTTCACACAAGTACACAAGATCAAAGG

Function

symbol description
ccsapb Predicted to enable microtubule binding activity. Involved in several processes, including determination of heart left/right asymmetry; nervous system development; and regulation of cilium beat frequency involved in ciliary motility. Acts upstream of or within cilium movement. Located in ciliary basal body. Is expressed in brain and somite. Orthologous to human CCSAP (centriole, cilia and spindle associated protein).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0007507 heart development biological_process
GO:0007275 multicellular organism development biological_process
GO:0007049 cell cycle biological_process
GO:1990755 mitotic spindle microtubule depolymerization biological_process
GO:0051301 cell division biological_process
GO:1901673 regulation of mitotic spindle assembly biological_process
GO:0048666 neuron development biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0007420 brain development biological_process
GO:0060296 regulation of cilium beat frequency involved in ciliary motility biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0061673 mitotic spindle astral microtubule cellular_component
GO:0042995 cell projection cellular_component
GO:0030424 axon cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0035869 ciliary transition zone cellular_component
GO:0005874 microtubule cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-51 Predicted to enable microtubule binding activity. Involved in several processes, including determination of heart left/right asymmetry; nervous system development; and regulation of cilium beat frequency involved in ciliary motility. Acts upstream of or within cilium movement. Located in ciliary basal body. Is expressed in brain and somite. Orthologous to human CCSAP (centriole, cilia and spindle associated protein).

Ensembl:

ensembl_id ENSDARG00000040085

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011800 False 2474 mRNA 0.40 4 24287093 24294103
TCONS_00011801 True 566 processed_transcript 0.47 2 24287723 24290238

Neighbor

gene id symbol gene type direction distance location
XLOC_005968 acta1b coding upstream 2651 24279021 ~ 24284442 (+)
XLOC_005967 abcb10 coding upstream 9561 24263049 ~ 24277532 (+)
XLOC_005966 pgbd5 coding upstream 230818 24022963 ~ 24056275 (+)
XLOC_005965 agt coding upstream 291217 23988442 ~ 23995876 (+)
XLOC_005964 sf3b5 coding upstream 385361 23897975 ~ 23901732 (+)
XLOC_005970 pdcd2 coding downstream 86029 24380132 ~ 24383805 (+)
XLOC_005971 zgc:153169 coding downstream 102563 24396666 ~ 24402100 (+)
XLOC_005972 rab1ab coding downstream 108303 24402406 ~ 24411961 (+)
XLOC_005973 sertad2b coding downstream 206860 24500963 ~ 24524545 (+)
XLOC_005974 lgalslb coding downstream 258151 24552254 ~ 24554028 (+)
XLOC_005962 CR352246.1 non-coding upstream 465793 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 876583 23388493 ~ 23410510 (+)
XLOC_005957 CR356222.1 non-coding upstream 1046516 23227531 ~ 23240577 (+)
XLOC_005954 NA non-coding upstream 1240224 23032097 ~ 23046869 (+)
XLOC_005951 NA non-coding upstream 1445699 22840009 ~ 22841394 (+)
XLOC_005975 NA non-coding downstream 276517 24570620 ~ 24572928 (+)
XLOC_005978 NA non-coding downstream 303562 24597665 ~ 24649939 (+)
XLOC_005984 AL929005.1 non-coding downstream 534650 24828753 ~ 24828869 (+)
XLOC_005997 BX530079.1 non-coding downstream 1149881 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 1475896 25769999 ~ 25782811 (+)

Expression


Co-expression Network