XLOC_005972 (rab1ab)


Basic Information

Item Value
gene id XLOC_005972
gene name rab1ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24402406 ~ 24411961 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011805
TTTCCTGGTTGAAGAGTCAGCCATTTTGGGTTTCAACCGACTAGCCTTTGCGGCAGTAGCTAGCCAGCTAGTTACTTTTTAATCGGGAGAAAGGTTATCGCTTCTAGTCTGTCTTCACGCCGCGGAGTTGTTTTGTTGAAAGACAAgcgctttttacagtgtccagTCCACGATGAATCCCGAATATGACTATTTATTCAAGCTGCTCTTGATTGGTGACTCTGGTGTTGGAAAGTCTTGCCTTCTTCTCAGATTTGCAGATGACACATACACAGAAAGCTACATTAGCACTATCGGTGTGGACTTTAAAATAAGAACTATAGAATTAGACGGAAAGACCATCAAACTTCAGATCTGGGATACAGCAGGGCAGGAGAGGTTTCGCACAATCACATCCAGCTACTACAGAGGAGCACATGGAATTATTGTAGTCTATGATGTTACAGATCAGGAATCTTTCAATAATGTAAAACAGTGGCTACAGGAGATTGACCGCTACGCCAGTGAAAATGTCAACAAGTTATTGGTTGGCAACAAGTGTGacttaacaacaaaaaaagtggtGGACTACACAACGGCAAAGgAATTTGCAGATTCCCTTGGCATTCCTTTCTTGGAAACTAGCGCTAAGAACGCCACAAATGTGGAGCAGGCCTTCATGACCATGGCTGCCGAGATCAAGAAGAGGATGGGCCCTGGAGCCACAGCCGGCGGCTCTGAAAAAACCATGAAGATCGAAAGCACTCCAGTGAAGCCTGCGTCTGGAGGCTGCTGCTGAGACCCTGTCTGCCCCGGACACCCCCCATCACCTCGGCCCCCGGATCTCAGAGCAACAGCCCTCAAAATAGGAGAAAGAAAGGGGAATAGATCATTCGTTAAGGAGCAAAGAGTCAATATGGAGAATAGAAAGAATAAAAGAGAGCGTGAAACCGGCAACAGTTTAAGTTACCCAAGTTGTACTGTATGTAGCCGCactaccaaaaaaacaaaaaaaactttcaagAATCTGCCCCCTCCCCCTACAAAAATAGTTCACAAACAAACTGAAGAGAGGTCCAAAATTTGGTTACTCGGTTCCATTAACCCCTACTGTTTGTCAGGGGCTGCTTTTAAGGATGGATTTCATTGTCACTCAACAATTTTAAGTCCTCTGTGTGCAGGTTTCCAagaataatgtgtgtgtttatctcaCTGCATTCCTACTGCAGGGCTGGTCTGTGGTCAATTCAATgacgttttgtttttttctgtccttTTCTTACTTTATTCTTACTTGTcgatttattttactgtttatatttGCATGTGTAGGTTCCTGTACCTGCGGGTTGTCTGTTGCGGTTCATCCGAGCAGCAGTGTATTTTCAGTCCGACATctgtttagtgaaatatatgtacatatacactatgtatatatatgtaagaTTGGAAATGACGGCTCTGTAGAGTTAAATACACGATTGGAGTAATTTTACCTTCTTTTGCATTTAAGTTTTGGCTGCAGACTCTTGTAGTTTTGTTGCGCGATGTGTAACAGTTAAcagaaatctaaataaatattgtacGAGCGTACTGTACGATAGCAGTATGTCTGCAATTCTTGGTGGGACATGTAGAAAAccctttgtgttttatttattcaacatttaTATGCAAATATCTATTGTTCCATTAATCTTGCAATCTCTCGATTTTTGGCCATTTACCTGCGGAGTACATCAAAAGCAACAGTTTCACAATCTCATATGTGACTCAAACACTATGTTCTCTTTTTCATAATAAAGGCAAatgaattcattttttaaatgaa

Function

symbol description
rab1ab Predicted to enable GTPase activity. Predicted to be involved in autophagosome assembly and intracellular protein transport. Predicted to be active in endomembrane system. Is expressed in testis. Orthologous to human RAB1A (RAB1A, member RAS oncogene family).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0000045 autophagosome assembly biological_process
GO:0012505 endomembrane system cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-564 Predicted to enable GTPase activity. Predicted to be involved in autophagosome assembly and intracellular protein transport. Predicted to be active in endomembrane system. Is expressed in testis. Orthologous to human RAB1A (RAB1A, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000029663

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011805 True 1810 mRNA 0.41 6 24402406 24411961

Neighbor

gene id symbol gene type direction distance location
XLOC_005971 zgc:153169 coding upstream 306 24396666 ~ 24402100 (+)
XLOC_005970 pdcd2 coding upstream 18601 24380132 ~ 24383805 (+)
XLOC_005969 ccsapb coding upstream 108303 24287093 ~ 24294103 (+)
XLOC_005968 acta1b coding upstream 117964 24279021 ~ 24284442 (+)
XLOC_005967 abcb10 coding upstream 124874 24263049 ~ 24277532 (+)
XLOC_005973 sertad2b coding downstream 89002 24500963 ~ 24524545 (+)
XLOC_005974 lgalslb coding downstream 140293 24552254 ~ 24554028 (+)
XLOC_005975 NA coding downstream 158659 24570620 ~ 24572928 (+)
XLOC_005976 echs1 coding downstream 167147 24579108 ~ 24582236 (+)
XLOC_005977 fuom coding downstream 172440 24584401 ~ 24586483 (+)
XLOC_005962 CR352246.1 non-coding upstream 581106 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 991896 23388493 ~ 23410510 (+)
XLOC_005957 CR356222.1 non-coding upstream 1161829 23227531 ~ 23240577 (+)
XLOC_005954 NA non-coding upstream 1355537 23032097 ~ 23046869 (+)
XLOC_005951 NA non-coding upstream 1561012 22840009 ~ 22841394 (+)
XLOC_005978 NA non-coding downstream 185704 24597665 ~ 24649939 (+)
XLOC_005984 AL929005.1 non-coding downstream 416792 24828753 ~ 24828869 (+)
XLOC_005997 BX530079.1 non-coding downstream 1032023 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 1358038 25769999 ~ 25782811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G76385 NA unknown CI01000012 null 12630755 ~ 12675666 (+)
rainbow trout (Oncorhynchus mykiss) LOC110502392 LOC105005759 coding NC_048587.1 CM023241.2 18805888 ~ 18819619 (+)
bowfin (Amia calva) AMCG00001644 rab1a,LOC107676578,LOC103035225,LOC107666439,LOC107601860,LOC105005759,LOC107725478 coding CM030143.1 CM030143.1 10709873 ~ 10717682 (+)