XLOC_005976 (echs1)


Basic Information

Item Value
gene id XLOC_005976
gene name echs1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24579108 ~ 24582236 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011809
ATGGCGCTGCTCTGCAGATCAACAGGGTTACTTCTCAAACACAGCAAACTGCTGCCCTCTGCTTTAGCAGCGACAAGGCAATCCAGTTCAGGTGTCCAGTATGAGTACATTCTGGTGGACAAAAAGGGTGAAAAGAAGAATGTTGGCTTCATCCAGCTGAACAGACCAAAGGCCCTGAATGCTCTTTGTGATGGACTCATGCTGGAGGTGGGCAAAGCGCTCGATGCATTTGAGATGGACAGTGAAGTGGGAGCAATCGTCGTCACCGGGAGTGAAAAAGCCTTTGCAGCTGGTGCTGACATTAAAGAGATGCAGAATCGAACCTTCCAAGAGTGTTATGGTGGAAACTTCTTGGCACATTGGAACAGGGTATCAACAGTCAAGAAGCCTGTTATTGCTGCGGTCAATGGGTTTGCGCTTGGCGGAGGATGTGAGTTTGCTATGATGTGTGACATCATCTATGCTGGAGAGAAGGCACAGTTCGGACAGCCAGAAATCCTGCTTGGGACCATTCCTGGTGCTGGTGGCACTCAGAGGCTTACAAGAGCAGTTGGAAAATCCCTTGCGATGGAGATGGTTCTCACTGGAGACCGAATCTCAGCCCAGGAGGCAAAACAGTCTGGCCTGGTTAGTAAAATATTTCCTGTGGATCAGCTGGTTCCAGAAGCGATCAAATGTGGAGAGAAAATCGCTGGCAATTCCAAACTGGTCTCAGCCATGGCAAAGGAATCTGTTAATGCCGCATTTGAACTGACTTTAGCTGAGGGCAGTCGGTTTGAGAAAAGATTGTTCCATGCAACCTTTGCTACGGAGGACAGAAAGGAGGGCATGTCTGCCTTTGTTGAGAAGAGAAAGGCTGCTTTCCAGGACAAGTAAAATTCCAGTGGAAAAAAAATGTGGTGACTTTTAAACCATGAATAGTTTGGGATCAAATGCTGAAGTTAAAATACTCAAATTTGCCTTAATTTTCTCATCAAGCATTTATGGACAACAAAAACATGAAGATTTATGAAACTGGGTTGTTTAACTGTAGTACAGCGAGTTCACATTTAGCTCAGATGATCTATATACATAAACTTTTTAATCATTGTCTAGTATTATTGATGATCTGGCATTAAATATTTGTTGTTGCACTGTAAATGGAGGATTGAAATGATCATTCATGCGTTGCAATATACATTTGAACGCTATAGAAGGGCCGTTGCTGtatagccttcctatactgtttgtAATCACCACACAACAAAGGTTTTGCGAAATATCTCTGATTTGACTGCATGTTGATCCAGTCATTCTAACAAATGTATTAGCAGAAGACATGAGATTCGAGTTATTGCTCTTTGTACACACTAGATGGTGCTGTGGTTGTATTTACAGTCACTCGTGTAGAGAATTCAGTGAGAAAATAAAATGACTGCTAT

Function

symbol description
echs1 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in EVL; gut; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human ECHS1 (enoyl-CoA hydratase, short chain 1).

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005739 mitochondrion cellular_component
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00650 Butanoate metabolism
ko00062 Fatty acid elongation
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation
ko00310 Lysine degradation
ko00380 Tryptophan metabolism
ko00410 beta-Alanine metabolism
ko00627 Aminobenzoate degradation
ko00930 Caprolactam degradation

ZFIN:

id description
ZDB-GENE-030616-617 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in EVL; gut; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human ECHS1 (enoyl-CoA hydratase, short chain 1).

Ensembl:

ensembl_id ENSDARG00000001578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011809 True 1421 mRNA 0.43 8 24579108 24582236

Neighbor

gene id symbol gene type direction distance location
XLOC_005975 NA coding upstream 6180 24570620 ~ 24572928 (+)
XLOC_005974 lgalslb coding upstream 25080 24552254 ~ 24554028 (+)
XLOC_005973 sertad2b coding upstream 54563 24500963 ~ 24524545 (+)
XLOC_005972 rab1ab coding upstream 167147 24402406 ~ 24411961 (+)
XLOC_005971 zgc:153169 coding upstream 177008 24396666 ~ 24402100 (+)
XLOC_005977 fuom coding downstream 2165 24584401 ~ 24586483 (+)
XLOC_005978 NA coding downstream 15429 24597665 ~ 24649939 (+)
XLOC_005979 msx3 coding downstream 80002 24662238 ~ 24664668 (+)
XLOC_005980 adam8a coding downstream 89245 24671481 ~ 24679636 (+)
XLOC_005981 zgc:66426 coding downstream 97438 24679674 ~ 24688122 (+)
XLOC_005962 CR352246.1 non-coding upstream 757808 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 1168598 23388493 ~ 23410510 (+)
XLOC_005957 CR356222.1 non-coding upstream 1338531 23227531 ~ 23240577 (+)
XLOC_005954 NA non-coding upstream 1532239 23032097 ~ 23046869 (+)
XLOC_005984 AL929005.1 non-coding downstream 246517 24828753 ~ 24828869 (+)
XLOC_005997 BX530079.1 non-coding downstream 861748 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 1187763 25769999 ~ 25782811 (+)
XLOC_006007 NA non-coding downstream 1362043 25944279 ~ 25961369 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12592469_12594321 ECHS1 coding CI01000012 null 12591958 ~ 12595201 (-)