XLOC_005977 (fuom)


Basic Information

Item Value
gene id XLOC_005977
gene name fuom
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24584401 ~ 24586483 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011810
ATCAAACGGTCACATGATTCCTCATAAACTTGCTCGTGTGCTGTCACTGCTTTAAAATGGTTATTCTTAAAGGAATTCCCTCTGTACTTACGCCTGAATTATTGTATGTTTTGGCGCAAATGGGCCATGGAGATGAACTAGttCTTGCAGATGCAAATTTTCCAACCTCATCTGTTTGTAAATGTGGTCCGGTGGAGATAAGAGCAGATGGTGTGCGTATACCAGAACTTCTGAAGGCAATCCTGAAGCTTTTTCCTCTTGATACTTATGATGAGTCGGCAGCTGTCATGGACCTTGTGCCTAGTGACTTATTAAAGGGGCTGAAAGTGCCGATATGGGACCAGTACTCAGAGCTCCTAAAACAAGCAGGATCAGATgGTAACATGAAGCCTGTTGAGCGGTTTGCATTTTATGAGCGTGCAAAGAAAGCATTTGCTGTAGTTGCAACTGGGGAGACTGCACTGTATGGAAATCTCATCATCAAGAAAGGTGTCATTCCTCCTGAAGAACAATGCTAAAAGAAGAGAGCTCTTTGTCAGTGCTAAAGTTAGTAGACCGATAGATATTGCACATACATTAAAAAGGATTGCATAtaattgtataaaaatgtaagttattaattttattttttgattttgatGACAAACATTTTTCTTTCTGTTGATAATCTCTGTAGGTCTCTGGAAATCAGGcaattcatttaataaaacaaatttaaaaataacatttattttagtttagctttGCAGGTGTAGCTCGATCCACAGCTGATCACATTTCATTTTGTGAGTTAACAATTAAGCTTTGTGAATAGCTTATTtctaaaacaatgaaaatgtcaTACTTTTGCCCTCTTATAAAATACATTCAGtcattgtattatatattttcaaaataaaagattcctacatttgtttaaaacattcagtACTAAACAATAAGTTAATAAGgcttattaattattgttttgatGAGTTCAAGACATGCTAAACATTTTGACAtgctaaaaaacattttcaattaaataaatgtattaattggaATTAAAA

Function

symbol description
fuom Predicted to enable fucose binding activity and racemase and epimerase activity, acting on carbohydrates and derivatives. Predicted to be involved in fucose metabolic process and fucosylation. Predicted to act upstream of or within monosaccharide metabolic process. Is expressed in blood. Orthologous to human FUOM (fucose mutarotase).

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0005996 monosaccharide metabolic process biological_process
GO:0006004 fucose metabolic process biological_process
GO:0036373 L-fucose mutarotase activity molecular_function
GO:0042806 fucose binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives molecular_function
GO:0048029 monosaccharide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-618 Predicted to enable fucose binding activity and racemase and epimerase activity, acting on carbohydrates and derivatives. Predicted to be involved in fucose metabolic process and fucosylation. Predicted to act upstream of or within monosaccharide metabolic process. Is expressed in blood. Orthologous to human FUOM (fucose mutarotase).

Ensembl:

ensembl_id ENSDARG00000039422

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011810 True 1049 mRNA 0.34 6 24584401 24586483

Neighbor

gene id symbol gene type direction distance location
XLOC_005976 echs1 coding upstream 2165 24579108 ~ 24582236 (+)
XLOC_005975 NA coding upstream 11473 24570620 ~ 24572928 (+)
XLOC_005974 lgalslb coding upstream 30373 24552254 ~ 24554028 (+)
XLOC_005973 sertad2b coding upstream 59856 24500963 ~ 24524545 (+)
XLOC_005972 rab1ab coding upstream 172440 24402406 ~ 24411961 (+)
XLOC_005978 NA coding downstream 11182 24597665 ~ 24649939 (+)
XLOC_005979 msx3 coding downstream 75755 24662238 ~ 24664668 (+)
XLOC_005980 adam8a coding downstream 84998 24671481 ~ 24679636 (+)
XLOC_005981 zgc:66426 coding downstream 93191 24679674 ~ 24688122 (+)
XLOC_005982 cfap43 coding downstream 131397 24717880 ~ 24743151 (+)
XLOC_005962 CR352246.1 non-coding upstream 763101 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 1173891 23388493 ~ 23410510 (+)
XLOC_005957 CR356222.1 non-coding upstream 1343824 23227531 ~ 23240577 (+)
XLOC_005954 NA non-coding upstream 1537532 23032097 ~ 23046869 (+)
XLOC_005984 AL929005.1 non-coding downstream 242270 24828753 ~ 24828869 (+)
XLOC_005997 BX530079.1 non-coding downstream 857501 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 1183516 25769999 ~ 25782811 (+)
XLOC_006007 NA non-coding downstream 1357796 25944279 ~ 25961369 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12587953_12589094 FUOM coding CI01000012 null 12587693 ~ 12589364 (-)