RNA id: TCONS_00011808


Basic Information

Item Value
RNA id TCONS_00011808
length 438
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_005974
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24552254 ~ 24554028 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgttttcacacagaacaaatacattttatgtgGGGATATGCTCAGTTGCATTGCATAGTTGTAATTTTGTGCATACAGTTCTGAATGTTGGTTTTCTGCACAGCTTTGACATCAGTTTAACCTGTGGCCACAATGAGGAGAAAGAGGATGAAAAGCTCGCTGATGTGGCCCTTAAACTCAGCGCTCGATTCACTGAAAGGCAGTTCTTGAGGAACGCACGGGTTTCTGGGAAATGGAGTGAGGAGGAGGCACCCATAGCTTACTTCCCCTTCATCCCGGACCAGCCTTTTAGGATTGAGATCCATTGTGAGCACCAGCGCTTTAGGATCTTTGTGGACGGACACCAGCTGTTTGACTTTTATCACAAAGTAAAGTCTTTGCAGGCCATTAATATGATCCGGATAGTTGGGAGTCTTCAGATCACCAAACTGGGATAA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-570 Predicted to enable carbohydrate binding activity. Orthologous to human LGALSL (galectin like).

Ensembl:

ensembl_id ENSDART00000147907

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013597 lncRNA upstream 1141744 23388493 ~ 23410510 (+) False XLOC_005959
TCONS_00013598 lncRNA upstream 1141744 23389975 ~ 23410510 (+) True XLOC_005959
TCONS_00011784 lncRNA upstream 1311677 23227531 ~ 23240577 (+) True XLOC_005957
TCONS_00011783 lncRNA upstream 1316678 23227531 ~ 23235576 (+) False XLOC_005957
TCONS_00011781 lncRNA upstream 1341280 23195965 ~ 23210974 (+) False XLOC_005956
TCONS_00013599 lncRNA downstream 16592 24570620 ~ 24572928 (+) True XLOC_005975
TCONS_00013600 lncRNA downstream 43637 24597665 ~ 24598245 (+) False XLOC_005978
TCONS_00011811 lncRNA downstream 43637 24597665 ~ 24649939 (+) False XLOC_005978
TCONS_00013397 lncRNA downstream 43683 24597711 ~ 24649939 (+) True XLOC_005978
TCONS_00011814 lncRNA downstream 121796 24675824 ~ 24677020 (+) True XLOC_005980
TCONS_00011806 mRNA upstream 27709 24500963 ~ 24524545 (+) False XLOC_005973
TCONS_00011807 mRNA upstream 27719 24519175 ~ 24524535 (+) True XLOC_005973
TCONS_00011805 mRNA upstream 140293 24402406 ~ 24411961 (+) True XLOC_005972
TCONS_00011804 mRNA upstream 150154 24396691 ~ 24402100 (+) True XLOC_005971
TCONS_00011803 mRNA upstream 151169 24396666 ~ 24401085 (+) False XLOC_005971
TCONS_00011809 mRNA downstream 25080 24579108 ~ 24582236 (+) True XLOC_005976
TCONS_00011810 mRNA downstream 30373 24584401 ~ 24586483 (+) True XLOC_005977
TCONS_00011812 mRNA downstream 108210 24662238 ~ 24664668 (+) True XLOC_005979
TCONS_00011813 mRNA downstream 117453 24671481 ~ 24679636 (+) False XLOC_005980
TCONS_00011815 mRNA downstream 125646 24679674 ~ 24688122 (+) False XLOC_005981
TCONS_00011801 other upstream 262016 24287723 ~ 24290238 (+) True XLOC_005969
TCONS_00011791 other upstream 730954 23821186 ~ 23821300 (+) True XLOC_005962
TCONS_00011768 other upstream 1679837 22863545 ~ 22872417 (+) False XLOC_005952
TCONS_00011748 other upstream 1949688 22555938 ~ 22602566 (+) False XLOC_005943
TCONS_00011821 other downstream 274725 24828753 ~ 24828869 (+) True XLOC_005984
TCONS_00011850 other downstream 889956 25443984 ~ 25444370 (+) False XLOC_005997
TCONS_00011851 other downstream 890256 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011863 other downstream 2149869 26703897 ~ 26709399 (+) False XLOC_006010
TCONS_00011865 other downstream 2150245 26704273 ~ 26772366 (+) True XLOC_006010

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_12598963_12604426.mRNA True 2818 mRNA 0.39 5 CI01000012 12597604 ~ 12605372 (-)