Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00011865 |
| length | 715 |
| RNA type | processed_transcript |
| GC content | 0.45 |
| exon number | 8 |
| gene id | XLOC_006010 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 26703897 ~ 26780797 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0036297 | interstrand cross-link repair | biological_process |
| GO:0048599 | oocyte development | biological_process |
| GO:0006513 | protein monoubiquitination | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043240 | Fanconi anaemia nuclear complex | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ko04120 | Ubiquitin mediated proteolysis |
| ko03460 | Fanconi anemia pathway |
| ko04121 | Ubiquitin system |
| ko03400 | DNA repair and recombination proteins |
| id | description |
|---|---|
| ZDB-GENE-040426-1045 | Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within oocyte development. Predicted to be part of Fanconi anaemia nuclear complex. Predicted to be active in nucleus. Is expressed in central nervous system; eye; heart; intermediate cell mass of mesoderm; and reproductive system. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group L. Orthologous to human FANCL (FA complementation group L). |
| ensembl_id | ENSDART00000131283 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013608 | lncRNA | upstream | 639009 | 26056461 ~ 26065264 (+) | False | XLOC_006009 |
| TCONS_00013607 | lncRNA | upstream | 639009 | 26056461 ~ 26065264 (+) | True | XLOC_006009 |
| TCONS_00013606 | lncRNA | upstream | 644761 | 26056457 ~ 26059512 (+) | False | XLOC_006009 |
| TCONS_00013605 | lncRNA | upstream | 720908 | 25965772 ~ 25983365 (+) | True | XLOC_006008 |
| TCONS_00013399 | lncRNA | upstream | 737931 | 25965727 ~ 25966342 (+) | False | XLOC_006008 |
| TCONS_00013400 | lncRNA | downstream | 30128 | 26802494 ~ 26809319 (+) | True | XLOC_006011 |
| TCONS_00011868 | lncRNA | downstream | 444275 | 27216641 ~ 27232573 (+) | False | XLOC_006014 |
| TCONS_00013401 | lncRNA | downstream | 444543 | 27216909 ~ 27231862 (+) | False | XLOC_006014 |
| TCONS_00013609 | lncRNA | downstream | 453939 | 27226305 ~ 27232573 (+) | False | XLOC_006014 |
| TCONS_00011869 | lncRNA | downstream | 454858 | 27227224 ~ 27231408 (+) | True | XLOC_006014 |
| TCONS_00011861 | mRNA | upstream | 779049 | 25846528 ~ 25925224 (+) | False | XLOC_006006 |
| TCONS_00011862 | mRNA | upstream | 847345 | 25853757 ~ 25856928 (+) | True | XLOC_006006 |
| TCONS_00011859 | mRNA | upstream | 942149 | 25761279 ~ 25762124 (+) | False | XLOC_006004 |
| TCONS_00011858 | mRNA | upstream | 977739 | 25720969 ~ 25726534 (+) | True | XLOC_006003 |
| TCONS_00011856 | mRNA | upstream | 1137965 | 25549425 ~ 25566308 (+) | False | XLOC_006002 |
| TCONS_00011866 | mRNA | downstream | 268521 | 27040887 ~ 27043334 (+) | True | XLOC_006012 |
| TCONS_00011867 | mRNA | downstream | 301535 | 27073901 ~ 27210001 (+) | True | XLOC_006013 |
| TCONS_00011870 | mRNA | downstream | 460328 | 27232694 ~ 27293794 (+) | False | XLOC_006015 |
| TCONS_00011872 | mRNA | downstream | 460482 | 27232848 ~ 27296949 (+) | False | XLOC_006015 |
| TCONS_00011874 | mRNA | downstream | 526307 | 27298673 ~ 27313556 (+) | True | XLOC_006016 |
| TCONS_00011851 | other | upstream | 1259750 | 25444284 ~ 25444523 (+) | True | XLOC_005997 |
| TCONS_00011850 | other | upstream | 1259903 | 25443984 ~ 25444370 (+) | False | XLOC_005997 |
| TCONS_00011821 | other | upstream | 1875404 | 24828753 ~ 24828869 (+) | True | XLOC_005984 |
| TCONS_00011801 | other | upstream | 2414035 | 24287723 ~ 24290238 (+) | True | XLOC_005969 |
| TCONS_00011791 | other | upstream | 2882973 | 23821186 ~ 23821300 (+) | True | XLOC_005962 |
| TCONS_00011871 | other | downstream | 460431 | 27232797 ~ 27237577 (+) | False | XLOC_006015 |
| TCONS_00011873 | other | downstream | 504204 | 27276570 ~ 27277227 (+) | True | XLOC_006015 |
| TCONS_00011887 | other | downstream | 1022764 | 27795130 ~ 27795209 (+) | True | XLOC_006022 |
| TCONS_00011888 | other | downstream | 1031701 | 27804067 ~ 27804145 (+) | True | XLOC_006021 |
| TCONS_00011890 | other | downstream | 1634547 | 28406913 ~ 28409584 (+) | False | XLOC_006025 |
