XLOC_006009


Basic Information

Item Value
gene id XLOC_006009
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 26056457 ~ 26065264 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013606
CAAGCTCTGACGGATATCCTGTCTGCTTTCCCTTTGAGCttagcctctctctctctttctttttctctctctctctctctggcttcTGTGCACTCGCTtgctttgctttctttttttccctgcCCCATCACTTATTCATGGAACAGGTTCAACTCCCAGCACTGATGTCTGGAAACGACGCGTGGACACAGAAGTGACAGTGGGTGGTTTCGTGAGTGGTCAGTGGTGGATAATAGCAGCCAAGCGATGGAGGGTTTGATGACACAAGCGTACCaaggttcagaaggaaaaaagacggtATGAACACTATAACCAGCCGAGAAAGTGGCAACGGGGGACAATTGAACTTGGGTTCGGTTCAGCTAATTGAACCAAGTGTAAAAGCACTTATTTTTCCAAATCACATGCaagctgatgaaaaaaaaaaaagaaaaatgatatTCATTATAATAAATCCAAATGAATGCTGAGATAatctatttgacattttattgtcataaataaataaaatgtaataataacatGCATAATATTACCActacaaacattttcttttattgtattgtaaaatATGATCTCTTCATCTACATTTGTGGTGACAAAATGTCTATAATGAATAAATTACtgagttaatttatttttagagcccaaataatttatttaattatgctaaaggtgaattgaatgagctaaattggttgtagtgtaagtgtggg
>TCONS_00013608
CTCTGACGGATATCCTGTCTGCTTTCCCTTTGAGCttagcctctctctctctttctttttctctctctctctctctggcttcTGTGCACTCGCTtgctttgctttctttttttccctgcCCCATCACTTATTCATGGAACAGGTTCAACTCCCAGCACTGATGTCTGGAAACGACGCGTGGACACAGAAGTGACAGTGGGTGGTTTCGTGAGTGGTCAGTGGTGGATAATAGCAGCCAAGCGATGGAGGGTTTGATGACACAAGCGTACCaaggttcagaaggaaaaaagacgGCAGACAACGAGGTGCTGGCCGCTCCATTATGGCCTTGTTTGCTCCTCGTATGCAGGATCATCCATACAATAAAGGCGAAATTAAAAGTTCTCAGATGTGAGGCACTGTTGGCACATGCTGCTAGCGCACGCATATTCTCTCTGCCCCCGGATGGATTGAAAATACCACGTACGCATGGGAGAGAAGGCCAGAGAGGGGAAAACGTGAGGGGCTGAATTCTGCCTGTCAGTGAGGTGCTGCTGTTTAATGGCGTATTTTAAATGCTTAGACTGCTATATATGCGCCCTAGTTAGTGGGCTGTTTCACACTTATAGGGGAAAAAAATCAGCCAAAagtgatcatttactcaccctttgtgTTGTTCTAAAAGTTTGTTTCTTATGTGCAGcacaaaagaaaaaagtttaaataatatactAGCAACTTTTTCCCCCATGCAAATGTAATTGCTTTGAAGCTTCACAAAGTATGTAAATGCATAGTAAAGAATTATAAAAGTTGTGTTTCATGCTCTATATTCAAAGTCTTCTGAAACCATAGAATAGCTTTGTGAGAGGAACAGAATAAAACATAAGTCATTATTATTCACTTACACTCTTAACATCTGCTCTAGCTTTCTTTTGCATGTAGAAGAGAATAATCAGCACATGCTAAGCAAGTTGGCTGGTGCTATGTTATGGTTCAGGCAATACATTTACTAAGCAAAATCTAACTAGCAACAATAGAAAAAGCATTTCACTCAATGTTCTGAACACAGAGAAAGACACAACAATAGACGAGTAACTGTATGTGACTTAACAACTTCCCActttcaccaaaaaataaaacaaaat
>TCONS_00013607
CTCTGACGGATATCCTGTCTGCTTTCCCTTTGAGCttagcctctctctctctttctttttctctctctctctctctggcttcTGTGCACTCGCTtgctttgctttctttttttccctgcCCCATCACTTATTCATGGAACAGGTTCAACTCCCAGCACTGATGTCTGGAAACGACGCGTGGACACAGAAGTGACAGTGGGTGGTTTCGTGAGTGGTCAGTGGTGGATAATAGCAGCCAAGCGATGGAGGCAGACAACGAGGTGCTGGCCGCTCCATTATGGCCTTGTTTGCTCCTCGTATGCAGGATCATCCATACAATAAAGGCGAAATTAAAAGTTCTCAGATGTGAGGCACTGTTGGCACATGCTGCTAGCGCACGCATATTCTCTCTGCCCCCGGATGGATTGAAAATACCACGTACGCATGGGAGAGAAGGCCAGAGAGGGGAAAACGTGAGGGGCTGAATTCTGCCTGTCAGTGAGGTGCTGCTGTTTAATGGCGTATTTTAAATGCTTAGACTGCTATATATGCGCCCTAGTTAGTGGGCTGTTTCACACTTATAGGGGAAAAAAATCAGCCAAAagtgatcatttactcaccctttgtgTTGTTCTAAAAGTTTGTTTCTTATGTGCAGcacaaaagaaaaaagtttaaataatatactAGCAACTTTTTCCCCCATGCAAATGTAATTGCTTTGAAGCTTCACAAAGTATGTAAATGCATAGTAAAGAATTATAAAAGTTGTGTTTCATGCTCTATATTCAAAGTCTTCTGAAACCATAGAATAGCTTTGTGAGAGGAACAGAATAAAACATAAGTCATTATTATTCACTTACACTCTTAACATCTGCTCTAGCTTTCTTTTGCATGTAGAAGAGAATAATCAGCACATGCTAAGCAAGTTGGCTGGTGCTATGTTATGGTTCAGGCAATACATTTACTAAGCAAAATCTAACTAGCAACAATAGAAAAAGCATTTCACTCAATGTTCTGAACACAGAGAAAGACACAACAATAGACGAGTAACTGTATGTGACTTAACAACTTCCCActttcaccaaaaaataaaacaaaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013606 False 716 lncRNA 0.37 2 26056457 26059512
TCONS_00013608 False 1127 lncRNA 0.41 3 26056461 26065264
TCONS_00013607 True 1082 lncRNA 0.41 2 26056461 26065264

Neighbor

gene id symbol gene type direction distance location
XLOC_006008 NA coding upstream 73092 25965727 ~ 25983365 (+)
XLOC_006007 NA coding upstream 95088 25944279 ~ 25961369 (+)
XLOC_006006 bcl11aa coding upstream 131233 25846528 ~ 25925224 (+)
XLOC_006005 NA coding upstream 273646 25769999 ~ 25782811 (+)
XLOC_006004 neurog3 coding upstream 294066 25761279 ~ 25762391 (+)
XLOC_006010 fancl coding downstream 638633 26703897 ~ 26780797 (+)
XLOC_006011 NA coding downstream 737230 26802494 ~ 26809319 (+)
XLOC_006012 soul2 coding downstream 975623 27040887 ~ 27043334 (+)
XLOC_006013 slc24a3 coding downstream 1008637 27073901 ~ 27210001 (+)
XLOC_006014 BX323884.1 coding downstream 1151377 27216641 ~ 27232573 (+)
XLOC_005997 BX530079.1 non-coding upstream 611934 25443984 ~ 25444523 (+)
XLOC_005984 AL929005.1 non-coding upstream 1227588 24828753 ~ 24828869 (+)
XLOC_006019 CR354610.2 non-coding downstream 1298685 27363949 ~ 27391937 (+)
XLOC_006021 NA non-coding downstream 1719830 27785094 ~ 27805880 (+)
XLOC_006022 dre-mir-30e-2 non-coding downstream 1729866 27795130 ~ 27795209 (+)

Expression


Co-expression Network