XLOC_006008


Basic Information

Item Value
gene id XLOC_006008
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25965727 ~ 25983365 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013399
CTCAGGCTGATTGACGGGCACTGCGACTTGATGGAGAGGGTCAGGGGTGACCCTGGGGCAGCAGTGGGGGCCTGGGTGACTGACGCTGGCTCTCCCTGTCCTCCGGGCTCAGGGATTGAATGTCAGCTTCTCTAATAACGGGTTATAGTGAAAAGGTCAGCTCCAGTCGTCTGACCATGAGAacggagagaaaaagagagatgaacGCAATGCCAGCGGCGGAAATTGATTGTCTGGCAGGGCGAAAGGAAatgaagagaaaaagaaaaatggaaggccgCACCTGAGAGAGGACTTCCTATACGCACAGCATCGCCACTAAATCTCTGCTAAATAAAAGCAGGAACGTCCGGCGAATACCAAATTGGCCCGCGTGGAGCTGCAGTGGAGGCCGCCAAACGCTGGATGGGTAACAGCTTTTGGCATGTGTACTGATATTATGCACTGATATTATTTGG
>TCONS_00013605
GGTGACCCTGGGGCAGCAGTGGGGGCCTGGGTGACTGACGCTGGCTCTCCCTGTCCTCCGGGCTCAGGGATTGAATGTCAGCTTCTCTAATAACGGGTTATAGTGAAAAGGTCAGCTCCAGTCGTCTGACCATGAGAacggagagaaaaagagagatgaacGCAATGCCAGCGGCGGAAATTGATTGTCTGGCAGGGCGAAAGGAAatgaagagaaaaagaaaaatggaaggccgCACCTGAGAGAGGACTTCCTATACGCACAGCATCGCCACTAAATCTCTGCTAAATAAAAGCAGGAACGTCCGGCGAATACCAAATTGGCCCGCGTGGAGCTGCAGTGGAGGCCGCCAAACGCTGGATGGGATTTCTCCATTGGATCTCCACTTGGCTATAACAGACTAAACACAGGCCACTCTTTCAGAAAAAGCTCTACTCTCCAGTTACAACCACCAGCAATGACCCGCGGGGAGGGTCAAGTGCTCTTCTCAAGGTCATGGCAAGAGGGCAGAGGTGTGACGGGGCTGGAGCAGAAGATCAACCTCCTGGGACCTGCTCCATATTGAGCCAAGATGGTCTGCAAACTGTGCACAGCCTATAATGAtgtgtataacATCTGATGGCACAGGCTGAGGATTTATTGGATGTTTTCTCCTGCCACCTGAAGTCACTAGTATATGTGCGTGACTTTGCAGTCCACTCTGCCACCGGTGATTTTTGGATGATCAGCTTCAGCAGAAGGCTTTTAGAAGGCCTGCAAGGCCATGGCCTGATTACCGGACACTTACACATTAAGCTGCTGAGGACGACCACATGACACTGCGCTCTCTTTCACCCTCCCTTCTCCATCTCTCTTTCCTCCACCCACATTTTTAACCAGAGTACCCTTGCTCTGGCCTGACAAGGTTATGCCACTATGCAGTGAGTATCTATTGATTTCCATCATCAAAGATCCCTGCAGCCAGAGACGGCTTTGCTGCTTCAGATAACACCCTGTCTTTCTTctttaactctctctctctctctctctctctctctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagagagagaggaaaaaaaaagagccaCAGTTGCCTCAGATTTCTGTCTCTAACTTCTCTCAGTTTACATGATGTGTCTTGTCCAGTGTTGAGTGTTATTAGCTTGTCCTTAGGGACTGGTCACCCTGGGGTCACATTAACAGTCATTTCTCTCAAGTGCAGGTTTGTTAatcactgtaaataaattatgaattgaAAGGCCAGTCTGTTTGCTTAAATATTAAAAGAGAGTGGGGAAAAGCTGTTGgcttaaacatttttattgtgtgCGTTTATGTTAACAGTTAGTGATTCTGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013399 False 458 lncRNA 0.52 2 25965727 25966342
TCONS_00013605 True 1442 lncRNA 0.48 4 25965772 25983365

Neighbor

gene id symbol gene type direction distance location
XLOC_006007 NA coding upstream 4358 25944279 ~ 25961369 (+)
XLOC_006006 bcl11aa coding upstream 40503 25846528 ~ 25925224 (+)
XLOC_006005 NA coding upstream 182916 25769999 ~ 25782811 (+)
XLOC_006004 neurog3 coding upstream 203336 25761279 ~ 25762391 (+)
XLOC_006003 pcbd1 coding upstream 239193 25720969 ~ 25726534 (+)
XLOC_006009 NA coding downstream 73092 26056457 ~ 26065264 (+)
XLOC_006010 fancl coding downstream 720532 26703897 ~ 26780797 (+)
XLOC_006011 NA coding downstream 819129 26802494 ~ 26809319 (+)
XLOC_006012 soul2 coding downstream 1057522 27040887 ~ 27043334 (+)
XLOC_006013 slc24a3 coding downstream 1090536 27073901 ~ 27210001 (+)
XLOC_005997 BX530079.1 non-coding upstream 521204 25443984 ~ 25444523 (+)
XLOC_005984 AL929005.1 non-coding upstream 1136858 24828753 ~ 24828869 (+)
XLOC_005978 NA non-coding upstream 1315788 24597665 ~ 24649939 (+)
XLOC_006014 BX323884.1 non-coding downstream 1233276 27216641 ~ 27232573 (+)
XLOC_006019 CR354610.2 non-coding downstream 1380584 27363949 ~ 27391937 (+)
XLOC_006021 NA non-coding downstream 1801729 27785094 ~ 27805880 (+)

Expression


Co-expression Network