RNA id: TCONS_00013400


Basic Information

Item Value
RNA id TCONS_00013400
length 251
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_006011
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 26802494 ~ 26809319 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttgtattttgtaaatataaaaagttaGGGAAATGTCCTTCCTAGGTCAAAGTTCAAAGAAGAAACAAAGCTGCACATGGGAGGAAGAAAATTCAACATCACAAAATCCTGTTTCACCTCTTCTCGCTCTAAAAGACTGAGTTTCATGCTTGTTTGGTCATACGGCACACGCAGAGCTGCTTCCTGAAGGTGGTCAACATGCAGGTCAGTGTGGTGTGGTTTCGTTTTCTGATTTGACCTCTGCTGACCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013608 lncRNA upstream 737230 26056461 ~ 26065264 (+) False XLOC_006009
TCONS_00013607 lncRNA upstream 737230 26056461 ~ 26065264 (+) True XLOC_006009
TCONS_00013606 lncRNA upstream 742982 26056457 ~ 26059512 (+) False XLOC_006009
TCONS_00013605 lncRNA upstream 819129 25965772 ~ 25983365 (+) True XLOC_006008
TCONS_00013399 lncRNA upstream 836152 25965727 ~ 25966342 (+) False XLOC_006008
TCONS_00011868 lncRNA downstream 407322 27216641 ~ 27232573 (+) False XLOC_006014
TCONS_00013401 lncRNA downstream 407590 27216909 ~ 27231862 (+) False XLOC_006014
TCONS_00013609 lncRNA downstream 416986 27226305 ~ 27232573 (+) False XLOC_006014
TCONS_00011869 lncRNA downstream 417905 27227224 ~ 27231408 (+) True XLOC_006014
TCONS_00011878 lncRNA downstream 511593 27320912 ~ 27324002 (+) True XLOC_006017
TCONS_00011864 mRNA upstream 21697 26703922 ~ 26780797 (+) False XLOC_006010
TCONS_00011861 mRNA upstream 877270 25846528 ~ 25925224 (+) False XLOC_006006
TCONS_00011862 mRNA upstream 945566 25853757 ~ 25856928 (+) True XLOC_006006
TCONS_00011859 mRNA upstream 1040370 25761279 ~ 25762124 (+) False XLOC_006004
TCONS_00011858 mRNA upstream 1075960 25720969 ~ 25726534 (+) True XLOC_006003
TCONS_00011866 mRNA downstream 231568 27040887 ~ 27043334 (+) True XLOC_006012
TCONS_00011867 mRNA downstream 264582 27073901 ~ 27210001 (+) True XLOC_006013
TCONS_00011870 mRNA downstream 423375 27232694 ~ 27293794 (+) False XLOC_006015
TCONS_00011872 mRNA downstream 423529 27232848 ~ 27296949 (+) False XLOC_006015
TCONS_00011874 mRNA downstream 489354 27298673 ~ 27313556 (+) True XLOC_006016
TCONS_00011865 other upstream 30128 26704273 ~ 26772366 (+) True XLOC_006010
TCONS_00011863 other upstream 93095 26703897 ~ 26709399 (+) False XLOC_006010
TCONS_00011851 other upstream 1357971 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011850 other upstream 1358124 25443984 ~ 25444370 (+) False XLOC_005997
TCONS_00011821 other upstream 1973625 24828753 ~ 24828869 (+) True XLOC_005984
TCONS_00011871 other downstream 423478 27232797 ~ 27237577 (+) False XLOC_006015
TCONS_00011873 other downstream 467251 27276570 ~ 27277227 (+) True XLOC_006015
TCONS_00011887 other downstream 985811 27795130 ~ 27795209 (+) True XLOC_006022
TCONS_00011888 other downstream 994748 27804067 ~ 27804145 (+) True XLOC_006021
TCONS_00011890 other downstream 1597594 28406913 ~ 28409584 (+) False XLOC_006025

Expression Profile

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