XLOC_006015 (rin2)


Basic Information

Item Value
gene id XLOC_006015
gene name rin2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27232694 ~ 27296949 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011870
ATGTAACAAAGACTTCTCCCTTCCAAAGACATTCCCAGCTGGAACACGTGACGTGAAAGCGCAATGCATATCAACTTTTGTTCTTCTCCTGGAGTTTGTTTTTGCCGGGAGAGGTCGCATGCTTCAACACAGCCATGAGTTAAATGAGACTTTCTTGCGAAGTACAAGGAAACAACTTCGCCTCGGTCATGCAGGAACATCTAAAACTGTTCACTGCAGCTCAGCCTTTGGAGAAACACCACCCAGCTCTTATAAATGCGTTACAACGCTTTTGTTAACGGGTGTTTTGATTTCGTCCCGTCGAGGAATAATGACGTACTAAGTAATGGAGGGATTTGTGATGAAAGAGGACCTGGAAGCAATACATTAAAGTAAAGGAAGCCACATATTCGAGACCCAGGCTGACACAGAAGAGCTGCGTACATCCAACCATGTCTGTAGAGATGATGATGCAGTCCTGCCTTATGGACCGGAGCAGCAGCTTCTTTAAGCTGATTGACACATTCTCAACGGAGATCTCAGAGTTGAAGCAGGAGATGGTTCAGCCAGCCAGAGAGCCGGAGACTGAAATCTTACAGGGTCTGGAAGGAGAGGTGAGTGGTCTATTCCTGCAGTCGTCTGCCTGTGCTGGTGTGCCAGGAGTGAGGGATTCTGGATATGATTCATTACGCAGACGCATGAGCATGCTGGACAGACTGATGCAGACACACTCTGTATGGCTGCTGCTGTCACTCAGCGATGATGAAGCCAGACACATTCTGCAGCCGCAGCCGGCAGGGAGTTTTGTGGTAAGGAGGTGTTATAAACTGCAGAAAAAGGTGATTTCCCTCCGGATGGACAGTGACACATTGATTGTTCGGGACTTTCCTGTTAAAGAGAGTCAATATACTTTTTCCCTGGAGGGCTCAGGAATCAGCTTTGCAGACCTCTTTCGTCTGGTGGCGTTCTGCTGTATCAGCAGAGACGTTCTGCCCTTCACCCTGAAGCTTCCTGAAGCTATTGCGTCTGCAAAGACCCCAACAGATCTAGAGGAAGTGGCTAAGTTGGGAAAAGGTTTTTGGGACTCGGAACTGTGCAATAAGAACAAGTCTTCTGTGTCTGGGGAAACTGCTTGTGATGGTTCAAAACAGAGACTAAAAAGAAGTCCAGCCGTCCCGTTTACCCGGACCCCTTCTGAACTTGAATGCAGCCAATCCAACGGTGCACTTTGCTTCATCAATCCCCTCTTCCTGCAGACACACCAATCTAACCCTTCACCCAAAAAGCAAGAACCATCCCCAGGTGACGAAGGTGGTGGCTCTCAGCACCACCACAGAGCTCTGCACAGAACAGGTCAGCAGCAAGGGGACAGCAGCGTATTCTGCCGTAAAACACCAAGCAAACCCCACATAAGTGTGAGCAGATCTGAGAGCGAGAGATCACCGCCGCCTAGGCCTCCACCTCCACGTTTTGGttccagcagatcagcagttctTCGCAAACAGAAGACCATGCCTGAAACAGTTTGTTGGATCAAAACACCTCAGGAAAAGACCAGCCTGCTGGGGAGATTGGGATCATCCTTCATTTCCTTATCTCCCTCATCCTCCCCACCGAAAAAGTTCAGCAAACCCATCCTGGTGCCCTCGGCCCGCAATAAGAACTCCTCCGGTCTGCTTGATGCGGACGGTATCCGATGCCACATGGCTTTGGATGATCAAACCATTGAGGATGCAGTGTCTTGGAGTCTGGCCAAGCTATCCTCTCGTAACCCCACTGCCATGGAGAATGGCAGCCCCGCGCATGAGCACTGCTCCACCGGGCGAGAGCGTCTGAGCGACATCAGCATCTCCACCTCGTCTTCAGACTCTCTTGACTTCTCCCACAGCTTTCCACTCCCCATGGAGGCCAGTCCCTCCAAAACGGACCGTCCCACTGGCGACAGCAGccaagaagaggaagaagatgaTGGTATCAATTTGGAGAGTGATCAAGAGGTGCCTTCACCTTTTAAATCAAAGAAGCAGAACAGCGCAGGGACATTTGTGTTGCCGCGAGCACTGAGAGGACAGTTGCGCAAGATGAGCGACGTTCTCAATTCTCTGATGACGCCCGAAAGGAGAGCCATTCGGAAGATCGTTGAGCAGTCTAGGGATAAAGGCACTTACTTTGGCTGCCTCGTGCAGGACTACGTGAGTTTCCTGCAGGAGAACCGGGGATGCCACACATCAGGCTTGGAACTGCTTCAGACACTCAGACAGTTCATGACCCAGATGAAGTCCTACTTGTTGCAGAGCTCAGAGCTTGACCCACCCATTGAGTCGCTTATCCCGGAGGATCAAATCGATCAGGTAATGGAGAAAGCCATGCACAAGTGTGTGCTGAAGCCGCTGAAGCCTGTGATCGAGGCAGCTCTGCGAGACTTCCAGTTGAGCAGCGGCACCATGCAGCAGCTGAAGGAGAATCTGCTTCTGGCCAAAGCCAAGCAGCCGCAGGAAATGGGTGTAGATGGAGCTCGGCCCCCCGACCCGGTGGCCATAGAGAAGATCCGACACAAATTCAACAACATGTGCAAGATGTACTCACCAGAGAAGAAAGTGTCTCTGCTGCTCAGTGTGTGCAAACTTATCtacaccatcatggagaacaacTCAGGGAGGATGTATGGGGCGGATGATTTCTTGCCCATGCTGACATATGTGATGGCCCAGTGCGACATGCCAGAGCTGGATACTGAAATACAGTACATGATGGAGCTACTGGACCCGTCGCTGCTGCATGGAGAAGGAGGTTATTACCTGACCAGTGCATATGGTGCAATGTCTCTGATCAAGAACTTCCAGGAGGATCAGGCTGCTCGTGAGCTGAGCTCCGAGACCAGAAACACACTGCACCAGTGGCACCGCAGACGCACAACTCAGAGAACCACACCATCTGTGGATGATTTCCAGAACTATTTGCGGGTGGCACTGCAAGATGCAAGCAGCGGCTGCACAGCCAAAACCCTTCAGGTTCAGCCTTATGCCACAACAGAGGACGTGTGTCAGATCTGCGCAGACAAGTTTAAAATCTCAGACCCGGAAAACTACGCTCTTTTCCTCCTGACAGAAGAAACCACGCAGCAGCTGACGCTCGACACGCACCCGCAGAAGATCAAGGCTGAACTGCACAGCCGGCCGCAGCCACAGATCTTCTACTTCGTTTACCGGCAGATCCAAAACTTCCCCGTCCTGTCAGAACAGCTCGACGACAACACTTCAGCAAACTGA
>TCONS_00011871
GCCGGGAGAGGTCGCATGCTTCAACACAGCCATGAGTTAAATGAGACTTTCTTGCGAAGTACAAGGAAACAACTTCGCCTCGGTCATGCAGGAACATCTAAAACTGTTCACTGCAGCTCAGCCTTTGGAGAAACACCACCCAGCTCTTATAAATGCGTTACAACGCTTTTGTTAACGGGTGTTTTGATTTCGTCCCGTCGAGGAATAATGACGTACTAAGTAATGGAGGGATTTGTGATGAAAGAGGACCTGGAAGCAATACATTAAAGTAAAGGAAGCCACATATTCGGTAAGGGGAGCCGGCTTCATGTGTCTGCTGCTTCTTAAGTATGATTTATTTGAACAAGATCTAATGGTTTATCTGTCTTTGCCGCTGAAGTGTGACTGTAGTCAGCACATGCAGACCTCATTTTCGTTTGAAGCATTGTTTCAGCTAGAGTGCAGTTAAGCTCAGCCAGCAGCTTTGTGTGTTAATGTCATTCACCACAGAAAAATGATTTAAACGTCAGTTAGAAGAGCTTACAAGAGCCTTCTGTTACTTTCTTATATGATGGCAGATGAATTATAACATTTTTGTTATCGGTACTTGAACAGTATTTCGTAATTATCATAATTTGAAGATGACAACATGTGTCTTTATATTTGGAGA
>TCONS_00011872
TTGCGAAGTACAAGGAAACAACTTCGCCTCGGTCATGCAGGAACATCTAAAACTGTTCACTGCAGCTCAGCCTTTGGAGAAACACCACCCAGCTCTTATAAATGCGTTACAACGCTTTTGTTAACGGGTGTTTTGATTTCGTCCCGTCGAGAGACCCAGGCTGACACAGAAGAGCTGCGTACATCCAACCATGTCTGTAGAGATGATGATGCAGTCCTGCCTTATGGACCGGAGCAGCAGCTTCTTTAAGCTGATTGACACATTCTCAACGGAGATCTCAGAGTTGAAGCAGGAGATGGTTCAGCCAGCCAGAGAGCCGGAGACTGAAATCTTACAGGGTCTGGAAGGAGAGGTGAGTGGTCTATTCCTGCAGTCGTCTGCCTGTGCTGGTGTGCCAGGAGTGAGGGATTCTGGATATGATTCATTACGCAGACGCATGAGCATGCTGGACAGACTGATGCAGACACACTCTGTATGGCTGCTGCTGTCACTCAGCGATGATGAAGCCAGACACATTCTGCAGCCGCAGCCGGCAGGGAGTTTTGTGGTAAGGAGGTGTTATAAACTGCAGAAAAAGGTGATTTCCCTCCGGATGGACAGTGACACATTGATTGTTCGGGACTTTCCTGTTAAAGAGAGTCAATATACTTTTTCCCTGGAGGGCTCAGGAATCAGCTTTGCAGACCTCTTTCGTCTGGTGGCGTTCTGCTGTATCAGCAGAGACGTTCTGCCCTTCACCCTGAAGCTTCCTGAAGCTATTGCGTCTGCAAAGACCCCAACAGATCTAGAGGAAGTGGCTAAGTTGGGAAAAGGTTTTTGGGACTCGGAACTGTGCAATAAGAACAAGTCTTCTGTGTCTGGGGAAACTGCTTGTGATGGTTCAAAACAGAGACTAAAAAGAAGTCCAGCCGTCCCGTTTACCCGGACCCCTTCTGAACTTGAATGCAGCCAATCCAACGGTGCACTTTGCTTCATCAATCCCCTCTTCCTGCAGACACACCAATCTAACCCTTCACCCAAAAAGCAAGAACCATCCCCAGGTGACGAAGGTGGTGGCTCTCAGCACCACCACAGAGCTCTGCACAGAACAGGTCAGCAGCAAGGGGACAGCAGCGTATTCTGCCGTAAAACACCAAGCAAACCCCACATAAGTGTGAGCAGATCTGAGAGCGAGAGATCACCGCCGCCTAGGCCTCCACCTCCACGTTTTGGttccagcagatcagcagttctTCGCAAACAGAAGACCATGCCTGAAACAGTTTGTTGGATCAAAACACCTCAGGAAAAGACCAGCCTGCTGGGGAGATTGGGATCATCCTTCATTTCCTTATCTCCCTCATCCTCCCCACCGAAAAAGTTCAGCAAACCCATCCTGGTGCCCTCGGCCCGCAATAAGAACTCCTCCGGTCTGCTTGATGCGGACGGTATCCGATGCCACATGGCTTTGGATGATCAAACCATTGAGGATGCAGTGTCTTGGAGTCTGGCCAAGCTATCCTCTCGTAACCCCACTGCCATGGAGAATGGCAGCCCCGCGCATGAGCACTGCTCCACCGGGCGAGAGCGTCTGAGCGACATCAGCATCTCCACCTCGTCTTCAGACTCTCTTGACTTCTCCCACAGCTTTCCACTCCCCATGGAGGCCAGTCCCTCCAAAACGGACCGTCCCACTGGCGACAGCAGccaagaagaggaagaagatgaTGGTATCAATTTGGAGAGTGATCAAGAGGTGCCTTCACCTTTTAAATCAAAGAAGCAGAACAGCGCAGGGACATTTGTGTTGCCGCGAGCACTGAGAGGACAGTTGCGCAAGATGAGCGACGTTCTCAATTCTCTGATGACGCCCGAAAGGAGAGCCATTCGGAAGATCGTTGAGCAGTCTAGGGATAAAGGCACTTACTTTGGCTGCCTCGTGCAGGACTACGTGAGTTTCCTGCAGGAGAACCGGGGATGCCACACATCAGGCTTGGAACTGCTTCAGACACTCAGACAGTTCATGACCCAGATGAAGTCCTACTTGTTGCAGAGCTCAGAGCTTGACCCACCCATTGAGTCGCTTATCCCGGAGGATCAAATCGATCAGGTAATGGAGAAAGCCATGCACAAGTGTGTGCTGAAGCCGCTGAAGCCTGTGATCGAGGCAGCTCTGCGAGACTTCCAGTTGAGCAGCGGCACCATGCAGCAGCTGAAGGAGAATCTGCTTCTGGCCAAAGCCAAGCAGCCGCAGGAAATGGGTGTAGATGGAGCTCGGCCCCCCGACCCGGTGGCCATAGAGAAGATCCGACACAAATTCAACAACATGTGCAAGATGTACTCACCAGAGAAGAAAGTGTCTCTGCTGCTCAGTGTGTGCAAACTTATCtacaccatcatggagaacaacTCAGGGAGGATGTATGGGGCGGATGATTTCTTGCCCATGCTGACATATGTGATGGCCCAGTGCGACATGCCAGAGCTGGATACTGAAATACAGTACATGATGGAGCTACTGGACCCGTCGCTGCTGCATGGAGAAGGAGGTTATTACCTGACCAGTGCATATGGTGCAATGTCTCTGATCAAGAACTTCCAGGAGGATCAGGCTGCTCGTGAGCTGAGCTCCGAGACCAGAAACACACTGCACCAGTGGCACCGCAGACGCACAACTCAGAGAACCACACCATCTGTGGATGATTTCCAGAACTATTTGCGGGTGGCACTGCAAGATGCAAGCAGCGGCTGCACAGCCAAAACCCTTCAGGTTCAGCCTTATGCCACAACAGAGGACGTGTGTCAGATCTGCGCAGACAAGTTTAAAATCTCAGACCCGGAAAACTACGCTCTTTTCCTCCTGACAGAAGAAACCACGCAGCAGCTGACGCTCGACACGCACCCGCAGAAGATCAAGGCTGAACTGCACAGCCGGCCGCAGCCACAGATCTTCTACTTCGTTTACCGGCAGATCCAAAACTTCCCCGTCCTGTCAGAACAGCTCGACGACAACACTTCAGCAAACTGAAGAAGAGCAAATCCTCTCAAAACTGAGTCCTCTGCTTCCCCAGGAACACTGCTGACGTCTGCAATGTTTTGAGTGAAAAAGCCGAAGGGAAACGGAATGTGCTGGAGGAAAATAGGGAAGGAAGGATGCGTCTGACAGATGCAGCGGATTTTATGCTCTGTCTTCACTATTTTCATAAGGTTTTGGGAAGTGGCACACGAGTGTCACGAGAGAGAAGCTGCACCTAACCTGCACGTTTTATCTGCTTCATTAGAATTGTTCAAACACATTCAGGTTAGCAGAGAAAGAGCAGCGTTTGTATTGTGTTTGAGTATGCTTTGCACATTACTCATACAATGTACAGTGCTCTCCCTTAATATTGACACccttggtaaatatgagcaaagaagGCTGTGGAAAATGTCTCTGTTTAACTTTGTGATCCTTTGCTTAAAATATTAGCAGAAAAACTCAACAAACAATTGCAAACaacatataattttatatataaaaaaaaatatatatatattgttgatgAATATGTGTGCTCTAATTATTAGGACCTACAtgatcaacccaggctcattctgattacgtacccctatatacatttctggagagagcaaaatacatcccaggagctacgtttttttgttgtttttgttttcacgaatccactagaggccgctgtgtatgccttttcagttttcagatttcttttgcgagtgccattcacgcctgctgttttcATGtacatccaccagaggccgctgtcaactcgAACCCCATTGTTGTTTTCAACTCCGCTCCGCTGCGCCCCAAGTCCGCCGATGTAAATGTcaagctaccagacaaactggaaacagcagaaaagccatacAGGggcaagcagtcagctggtaagcgataaatggaacggcgtcataccgctccgtagtgtttattttaaagatgaaatgcagccatacgtggctcaggctacataattcacgatgtccagaaatgtgtatagggctacattttcagaatgagtctatgttgtaTATGATGGAATTTACAGCATTCCTTTAGCTTCAAACTATGGGCTGTGGCttaaaaaagctcattttcaccATCAGGCCAATAAGAAATTCCAGTGAACATTGTGTCTCTCTGTCAGGAGGAGAGTTCAGGCTGCCAAAACATCTTAACATTCACAGCTGGAGAATCGCAGAAGTTAGTTGCCATTAATACTAGtgcgtttttgtttttaaaaatataggtTTAATTACGTTTACACCTGGCATCTGCACTACTTCGGCATCTTTGACCCAGGAAAATGATTTAGCTCTTAAATGCTAGGGGTTCTGTTTTAATATAGACAGGCTGAAACACGAGGTGTGACTATCCACAATCACTCCCTGATTGTTCTTCTGGACTAATGCTGATCGTTCCCTGATTCACCAAGCCCCTCTAATATGACATCAGACAACCAGTAGACTGCAATGCTGACCAAATATGCACATGTCCAGTGAGATGGTCACATTTTAGGCGATAGAGTGTAGACAGAGACTGTTTTTCTGAAATATAGTACAAACACCAGTctacatttataaatgaaatacactcatgtaaatgcagccttagttgGGGCTTGGGCTGAGAAAGTCTTGAAAACTACAATCTTCACCAAACTTTTCAACccatgacccccaaaataacaatgccagtgactcatggCCCCCAATATCCTCTtatgtggttataaatatataaacagcacacacagtaggcccaagtctattcctCATTTAAACGTGAATGCCGTAAAGGTGTGAAAGTTttccataaaatcaatgtgctgcatctgacgcatttgctgtgtttttattCTAACATAATCACCCTAggagttgcaaaaaaaaaaaagaaacgttaggctgatggctttttatttgcatgttgtttttttatgtaactattgcCTTCAAAATTTTTCTTCTGTAGGTTtttgataaaatatggtaattctaatagtttaataaaatgaattagattttggAAATCCCCCCAAAAATGTCAAATCAAAAATGTCAAACGATGTTGCCTTCTTTGTTCGTATTTACCAGTGGTGCCAGTAGTAGTGAGTGTACTCCAGGACTGTACATCTCCTCTTTTAGGTTGTGCATTCTTAATTGACTGCTCTTTTCTGCAGGATGCGAGCGTTGCATTGAGGCGAAGACTTTTGTCATTTGTTCAGTAAAATGAACATCTCAGTCCTTAAGGATGTTGTGGACCATTGTTTTTTATGatacttaatatttttttgcagttgcTGGTAAACTgcattctttttatatatatatgatgtattGTTATTATAGTAGTGCATGTATCCTTGTGATCAAAAGACCAATTTAAAAAACCAGGCATTGTTGCCAGTGATGTTTTTATCATATTGCTTTCGTATGGATTCTGACCGTTATGTTTGTTGAAGTCAGTTGGGATAGAGATAGTAGAAAGTTAAAGGTTTAGTTCTTAAATACTGTACTACTACTGACAAGCTACACATTTAAGGCTTGTGGTAAACTGGGTCTCTGATGTACTGATTTTGGTTTTGATGGGTTTTCCGCAAGTTGAACAGCTGGAAAGTTCTGTGTAATGTAagaggaattaaaaaaaaaaacttttaaagcagGTTAAGAGTCATTGGTAGGAACTATCAATGAACAGAAATGATTTTTGTTACTGTAAATGCTATCAGGGAAGGTCGAGTCATATCCAGGAGAATAGCTCTTTGACATTCATAACTATACTCATAACCTCAGTAACTTACCAAGTATTTCATGCTCTACTAATGTACTTTACATTTGCATGTTGTATTGTAAACTCGGggcattgtgtgtgttttttaataagAGACGGGGTGCTGGAATGCTCTAATCCTATGTAATGATGATATTGAAACACTAGTCACAACTGAAACACAAACTACATGTTTTAAAACGTTATTTTAAGTCTGATAAgtgtatacatatttatatacaatcTGTGCAGGAATTTCACAGATTTGAGAAGTCTTTATTAAAAAACTGTTATTCATTTGGAGAAAAGCTTATACTCATTCTTTAGTCAGTTCTTCATATTTGCCTTTTTGTCAGTGTACTCTTTTGCACAATAAACTGATGTTGAACATT
>TCONS_00011873
GTAGACGTGTACACTTATGCTCAAACTATTTACATAGATTCTGAAGAGAAAGCTTTATGATAAGCAGCGTTTTTGGGACTCGGAACTGTGCAATAAGAACAAGTCTTCTGTGTCTGGGGAAACTGCTTGTGATGGTTCAAAACAGAGACTAAAAAGAAGTCCAGCCGTCCCGTTTACCCGGACCCCTTCTGAACTTGAATGCAGCCAATCCAACGGTGCACTTTGCTTCATCAATCCCCTCTTCCTGCAGACACACCAATCTAACCCTTCACCCAAAAAGCAAGAACCATCCCCAGGTGACGAAGGTGGTGGCTCTCAGCACCACCACAG

Function

symbol description
rin2 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human RIN2 (Ras and Rab interactor 2).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-194 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human RIN2 (Ras and Rab interactor 2).

Ensembl:

ensembl_id ENSDARG00000074589

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011870 False 3248 mRNA 0.51 13 27232694 27293794
TCONS_00011871 False 649 processed_transcript 0.41 2 27232797 27237577
TCONS_00011872 False 6162 mRNA 0.45 12 27232848 27296949
TCONS_00011873 True 330 processed_transcript 0.47 2 27276570 27277227

Neighbor

gene id symbol gene type direction distance location
XLOC_006014 BX323884.1 coding upstream 121 27216641 ~ 27232573 (+)
XLOC_006013 slc24a3 coding upstream 22693 27073901 ~ 27210001 (+)
XLOC_006012 soul2 coding upstream 189360 27040887 ~ 27043334 (+)
XLOC_006011 NA coding upstream 423375 26802494 ~ 26809319 (+)
XLOC_006010 fancl coding upstream 451897 26703897 ~ 26780797 (+)
XLOC_006016 slc17a5 coding downstream 1724 27298673 ~ 27313556 (+)
XLOC_006017 eef1a1a coding downstream 17846 27314795 ~ 27325885 (+)
XLOC_006018 cgas coding downstream 31149 27328098 ~ 27332360 (+)
XLOC_006019 CR354610.2 coding downstream 67000 27363949 ~ 27391937 (+)
XLOC_006020 asrgl1 coding downstream 471949 27768898 ~ 27782764 (+)
XLOC_006009 NA non-coding upstream 1167430 26056457 ~ 26065264 (+)
XLOC_006008 NA non-coding upstream 1249329 25965727 ~ 25983365 (+)
XLOC_006007 NA non-coding upstream 1271325 25944279 ~ 25961369 (+)
XLOC_006021 NA non-coding downstream 488145 27785094 ~ 27805880 (+)
XLOC_006022 dre-mir-30e-2 non-coding downstream 498181 27795130 ~ 27795209 (+)
XLOC_006024 NA non-coding downstream 967287 28264236 ~ 28282323 (+)
XLOC_006025 CR762431.1 non-coding downstream 1109964 28406913 ~ 28414559 (+)

Expression


Co-expression Network