RNA id: TCONS_00011887


Basic Information

Item Value
RNA id TCONS_00011887
length 80
RNA type miRNA
GC content 0.50
exon number 1
gene id XLOC_006022
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27795130 ~ 27795209 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACGGGCTACTGTAAACATCCTTGACTGGAAGCTGGTGCACATGATGGAGCTTTCAGTCGGATGTTTGCAGCAGCCAACT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000118804

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013613 lncRNA upstream 403193 27375626 ~ 27391937 (+) True XLOC_006019
TCONS_00013610 lncRNA upstream 411619 27364280 ~ 27383511 (+) False XLOC_006019
TCONS_00011883 lncRNA upstream 411619 27369309 ~ 27383511 (+) False XLOC_006019
TCONS_00013611 lncRNA upstream 411619 27369375 ~ 27383511 (+) False XLOC_006019
TCONS_00013612 lncRNA upstream 411619 27373616 ~ 27383511 (+) False XLOC_006019
TCONS_00013614 lncRNA downstream 469027 28264236 ~ 28282182 (+) False XLOC_006024
TCONS_00013402 lncRNA downstream 482894 28278103 ~ 28282323 (+) True XLOC_006024
TCONS_00011892 lncRNA downstream 611861 28407070 ~ 28414559 (+) False XLOC_006025
TCONS_00013403 lncRNA downstream 680392 28475601 ~ 28483406 (+) True XLOC_006027
TCONS_00013615 lncRNA downstream 769970 28565179 ~ 28567016 (+) False XLOC_006030
TCONS_00011884 mRNA upstream 12366 27768898 ~ 27782764 (+) False XLOC_006020
TCONS_00011885 mRNA upstream 12926 27770424 ~ 27782204 (+) True XLOC_006020
TCONS_00011879 mRNA upstream 462770 27328098 ~ 27332360 (+) False XLOC_006018
TCONS_00011880 mRNA upstream 462796 27329556 ~ 27332334 (+) True XLOC_006018
TCONS_00011877 mRNA upstream 469245 27316934 ~ 27325885 (+) False XLOC_006017
TCONS_00011889 mRNA downstream 156479 27951688 ~ 28009574 (+) True XLOC_006023
TCONS_00011894 mRNA downstream 622088 28417297 ~ 28442086 (+) True XLOC_006026
TCONS_00011895 mRNA downstream 700210 28495419 ~ 28501985 (+) False XLOC_006028
TCONS_00011896 mRNA downstream 700774 28495983 ~ 28500944 (+) True XLOC_006028
TCONS_00011897 mRNA downstream 717321 28512530 ~ 28572642 (+) False XLOC_006029
TCONS_00011873 other upstream 517903 27276570 ~ 27277227 (+) True XLOC_006015
TCONS_00011871 other upstream 557553 27232797 ~ 27237577 (+) False XLOC_006015
TCONS_00011865 other upstream 1022764 26704273 ~ 26772366 (+) True XLOC_006010
TCONS_00011863 other upstream 1085731 26703897 ~ 26709399 (+) False XLOC_006010
TCONS_00011851 other upstream 2350607 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011888 other downstream 8858 27804067 ~ 27804145 (+) True XLOC_006021
TCONS_00011890 other downstream 611704 28406913 ~ 28409584 (+) False XLOC_006025
TCONS_00011891 other downstream 611854 28407063 ~ 28410545 (+) False XLOC_006025
TCONS_00011893 other downstream 612169 28407378 ~ 28414559 (+) True XLOC_006025
TCONS_00011910 other downstream 940241 28735450 ~ 28738166 (+) False XLOC_006036

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_10696109_10703071.mRNA False 1299 mRNA 0.42 7 CI01000012 10695756 ~ 10703186 (-)