XLOC_006029 (fbxw4)


Basic Information

Item Value
gene id XLOC_006029
gene name fbxw4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28512530 ~ 28575459 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011897
GCAATTTATTGATAAAAGGTTTAGAAATCATATGAATACATGACAATtgcatttttacaaaacaaattagTGCTTTAATTAAACActacaaaatgttaaaaataattacagttaCCGCAATATATCtccaaatatttagatttttttacttgcttattatttttttccttcctttttttcataatatattattaaGGATGTTAATATGCTACGTTTAGCTTAATATTACTTGTTTCAATATGTTGTGAATTTCATAcagaaaagaataaaaaacagcAGAATCTTGAATGAAGATATCACGGTAAACAGGCTGCATTTAAGCATAGACTGTAAGCCACTGGCTCAGCTCTGCGGTCAGTCACTAGACCGCTTTACGCACGGCGAGGGTCACGTGACTACTTGTTGTGATGGCTTCCTTCGCTTACTGTGTCTACATGCTTTGACAAAACCATGGGCTTCTGCGTGTTCCTGCGTCAAACCGGCAAATGTCCTCTAGGTAAAACCCTTCATATAATTGGAGGCAGACGCAACGTGACaaagaaaagagaagaggggctgaACTGGAGCAGGAGGCGCAATGTTTGTGTTTCAGTTACCCGAGGATGTGCTCTTCCTCGTCCTCTCCTATCTGGATCCAAAATCGCTCTGCCGCTTCTCCCAGACATGCAGGAGAAGCTACCAGTTCATCTCCAGAGACGCTGTTTGGAGGAGAATAGCTAAAGACATGATCAATACTGGCCTGACACGACAAGGAATAGATCTGTGTCATTCAGTTCCTCTTAAGGATAGAGTGAGGGTGTCCCATAACTGGACCCATGGAGTCTGTCGTAAGGAAATCCTTTTGAAATGGAAAATTAACTTGTTGCCGTGGATACAGCTGGACTGTGATGTGCTGTATCTCTCTCAGGCTGCAAACATCAGCGCGTACCATCTGAGAGCGGACGGGGGAAAGTTGCAGAACAGCCGAGTCGCCCTGTTCTCGGGACACCAAGAGGACGTCTGCAGATTCACTTTGACAGACACACACCTGATCAGTGCAGGAGGAGAtggtaaaataattgttcatGACAGAGGAAGTGATTACTCTGTGGTGTTTTATGGCCACAATCAGGAGGTGAATTGCATTGACTGTAAAGGTGCTGTGATAGTCAGTGGCTCCAGAGACAAGAGTGCGaagATTTGGGCTCTGACTCCAGATCGTTTTGGACAGTGCCTACATACAATCCCCACGTATGACAGAGTGTGGTCAGTGGCCATCAGTCCATCTCTAGGGACGTTTGTGACTGGAACAGCCTGCTGTGAGAATTTTGCTCCTCTTCGAATCTGGGACACTGAAAGGTGTCACCTGGTGTCGTGTCTCGGTACGGAGTTCCGCAGAGGTGCAGGTGTGTTGGACATCATCTACGAGTCTCCCTTCCAGCTTCTCACCTGCGGATACGACACCTTCATCCGCTACTGGGATCTGCGCGTCTGCTCCAGGAAGTGTGTGATGGAGTGGGAGGAGCCTCATGACAGCGCCCTCTACTGTATAAAGACAGACAGGAATCACATGATTGCCAGTGGCTCATCGTACTATGGAGTTGTGCGTCTATGGGACAAAAGGCAAACCCGCTGTTTACAGATGTTCCAGTTGGCACCCACCACCAGCAGCCCAGTGTACAGCCTGTGCTTCAACACCACCCACCTATATGCCGCCTTGGCCTCCGTCCTGTATTCACTGGACTTCAGAAATGCAGGCTCCCAGTCTTGGAAATAACCATGCAGACGATGCCTTACCCAAGCTGCATTAGCTTGTGCTGAAGTATCAAGTGTCATAGAGGCTAATCACACAGACGAGAAGAAGAGGCTTCAATCGGCAGTGACATCGCAGAGGATTCTGAGGTAATTCTACACCAATAGTGCCATCTAAAGGACGCTGGAAGAACACATCTACTGCATTTTATTCTGCCACACTTAAAACACAGGCAGCATTTTTTTCACACAACAAAATTACGTTTGTCCGTCCACTTTTcgttttttctgtattatttatacgaaatata
>TCONS_00011898
GCCACTGGCTCAGCTCTGCGGTCAGTCACTAGACCGCTTTACGCACGGCGAGGGTCACGTGACTACTTGTTGTGATGGCTTCCTTCGCTTACTGTGTCTACATGCTTTGACAAAACCATGGGCTTCTGCGTGTTCCTGCGTCAAACCGGCAAATGTCCTCTAGGTAAAACCCTTCATATAATTGGAGGCAGACGCAACGTGACaaagaaaagagaagaggggctgaACTGGAGCAGGAGGCGCAATGTTTGTGTTTCAGTTACCCGAGGATGTGCTCTTCCTCGTCCTCTCCTATCTGGATCCAAAATCGCTCTGCCGCTTCTCCCAGACATGCAGGAGAAGCTACCAGTTCATCTCCAGAGACGCTGTTTGGAGGAGAATAGCTAAAGACATGATCAATACTGGCCTGACACGACAAGGAATAGATCTGTGTCATTCAGTTCCTCTTAAGGATAGAGTGAGGGTGTCCCATAACTGGACCCATGGAGTCTGTCGTAAGGAAATCCTTTTGAAATGGAAAATTAACTTGTTGCCGTGGATACAGCTGGACTGTGATGTGCTGTATCTCTCTCAGGCTGCAAACATCAGCGCGTACCATCTGAGAGCGGACGGGGGAAAGTTGCAGAACAGCCGAGTCGCCCTGTTCTCGGGACACCAAGAGGACGTCTGCAGATTCACTTTGACAGACACACACCTGATCAGTGCAGGAGGAGAtggtaaaataattgttcatGACAGAGGAAGTGATTACTCTGTGGTGTTTTATGGCCACAATCAGGAGGTGAATTGCATTGACTGTAAAGGTGCTGTGATAGTCAGTGGCTCCAGAGACAAGAGTGCGaagATTTGGGCTCTGACTCCAGATCGTTTTGGACAGTGCCTACATACAATCCCCACGTATGACAGAGTGTGGTCAGTGGCCATCAGTCCATCTCTAGGGACGTTTGTGACTGGAACAGCCTGCTGTGAGAATTTTGCTCCTCTTCGAATCTGGGACACTGAAAGGTGTCACCTGGTGTCGTGTCTCGGTACGGAGTTCCGCAGAGGTGCAGGTGTGTTGGACATCATCTACGAGTCTCCCTTCCAGCTTCTCACCTGCGGATACGACACCTTCATCCGCTACTGGGATCTGCGCGTCTGCTCCAGGAAGTGTGTGATGGAGTGGGAGGAGCCTCATGACAGCGCCCTCTACTGTATAAAGACAGACAGGAATCACATGATTGCCAGTGGCTCATCGTACTATGGAGTTGTGCGTCTATGGGACAAAAGGCAAACCCGCTGTTTACAGATGTTCCAGTTGGCACCCACCACCAGCAGCCCAGTGTACAGCCTGTGCTTCAACACCACCCACCTATATGCCGCCTTGGCCTCCGTCCTGTATTCACTGGACTTCAGAAATGCAGGCTCCCAGTCTTGGAAATAACCATGCAGTAAGGTTACTTGAAAATTTTAGCCTTGTTCTTTGTCTCCTCCAAGCCTTTTAGCGCAGGTCTCAGCTCTCGGACAGAGCAGTGGGCATCTTGCCTTTTGAAAAATCTGCAGAGCTAACAGTACAGTCGTGGCCTTGTGGATATTTCCTCTGTCACAAGCTCCTGAGAGCGTGCAGGGTTCACGACCTTCTGTGGCCCAAGTCTTAACGGACTTAACACATTGCCAGCGACCTCTGGGATGTCTAAAACAAACACTGCTCAGAGCTGCCAACACCCGCTGAGGGGATTTATGCTAAACCACGGCACATATGATAATAGATATATTGAAACTCAAAGTATATTTTTCCAACAAAGAGCCAATTAAAcctgttttatt
>TCONS_00013617
cttcagttTCCGAGTGTACGTTATTTCAAGGACGATGCCTTACCCAAGCTGCATTAGCTTGTGCTGAAGTATCAAGTGTCATAGAGGCTAATCACACAGACGAGAAGAAGAGGCTTCAATCGGCAGTGACATCGCAGAGGATTCTGAGGATTACTTGTGCTGGGTCCCTCTCCCCCTTTGGCACTGCACTGGAGAATAGACAGATTAAGGGGATTAGCTTGTATCCTCCTAACTTGTCAAGCTGGGATGTAAGGATCCATTGACTTCGCTGTTCTGAATGAGAGAAGTGgctaaaaaagagagaaatgaaAGGCGGTGAACAAGAAAAATTCCTGGAAGAACAATGtgatttgtttgcttttgttcCTTTTAACTCGGCCGGTTCAAAGGGTCTCACCTAAGAAGCCGCGGTCCTGAGTCAGAGAGAGATATGTTGCAGGAATAAAGCGAGTGAGAGCCCTCAGCTATGGCTGTCAAAATAACATTTAGCACTGAACAAACAAGTTTACTTGAGAGATTACGCTGATTTTGCTGGGATCAGTGCTTGTCAGCTTTCTGGATGACACAGTGTTCTCAGGCTGTGTTTGAAATATGAACGACACAAACTTTACAGGGACAAACTGTAGTTCAGGAGGGCCTGTTCGGGTCCAGTGTTTTCACAACATCCTGACTGATAAGACGCCtctgctttttcttttctttttctttttttgtttgtttttaaaggtgGTGTCGATGTGTCCAGTCACTGTATATGTGTGATATGGAATGTGGTGACTGAAAATAAAagtcaactttaaaaaaaaaaaaaaacatgccctCAACATAAAACAGTTGCTTTGGGAagacatttcagatgacaaatctaatGGAGGGTAGTGTCTACATTttagcaaatctgaaatatgttgctTATAGGGTTAGTTGtgggtgattaatcgaaaagtatttaaaatcgacattcagaacctatatcgatctaatttttccaggtaattttttttcaattacttaccTTTTGGcgtgtggagtcacatgaccctgCTCTCTTTGCTTCTATTGTGTttctttgcactacattgacgctTGTGTAAGCTGTGCCAGAGATGCCTtgggacttttttttgtgaaaacatttgcttacagaagatgcaagaaacgcactgtttaaaatattattcacatGATATACAAgagattttaatatgaaaaatattgaaaattatttattttgtttgcaaatgtGCAAGTTACTTATTTGCACTTGTTTATAAGAAAGATTGACTGTTGGTCTTAGG

Function

symbol description
fbxw4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in split hand-foot malformation 3. Orthologous to human FBXW4 (F-box and WD repeat domain containing 4).

GO:

id name namespace
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-000516-1 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in split hand-foot malformation 3. Orthologous to human FBXW4 (F-box and WD repeat domain containing 4).

Ensembl:

ensembl_id ENSDARG00000033551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011897 False 2042 mRNA 0.45 10 28512530 28572642
TCONS_00011898 False 1806 mRNA 0.50 9 28512863 28561508
TCONS_00013617 True 1298 lncRNA 0.39 3 28572106 28575459

Neighbor

gene id symbol gene type direction distance location
XLOC_006028 fgf8a coding upstream 10545 28495419 ~ 28501985 (+)
XLOC_006027 NA coding upstream 29124 28475601 ~ 28483406 (+)
XLOC_006026 slc2a15a coding upstream 70444 28417297 ~ 28442086 (+)
XLOC_006025 CR762431.1 coding upstream 97971 28406913 ~ 28414559 (+)
XLOC_006024 NA coding upstream 230207 28264236 ~ 28282323 (+)
XLOC_006031 wbp1la coding downstream 4898 28580357 ~ 28596765 (+)
XLOC_006032 borcs7 coding downstream 36854 28612313 ~ 28615893 (+)
XLOC_006033 cnnm2a coding downstream 42627 28618086 ~ 28643260 (+)
XLOC_006034 inaa coding downstream 100227 28675686 ~ 28681036 (+)
XLOC_006035 polr1c coding downstream 114896 28690355 ~ 28694924 (+)
XLOC_006021 NA non-coding upstream 706650 27785094 ~ 27805880 (+)
XLOC_006037 CU640488.1 non-coding downstream 164776 28740235 ~ 28740369 (+)
XLOC_006039 NA non-coding downstream 232633 28808092 ~ 28817882 (+)
XLOC_006042 NA non-coding downstream 340079 28915538 ~ 29097526 (+)
XLOC_006043 CU639469.2 non-coding downstream 349387 28924846 ~ 28924965 (+)
XLOC_006044 NA non-coding downstream 507628 29083087 ~ 29083291 (+)

Expression


Co-expression Network