RNA id: TCONS_00011877


Basic Information

Item Value
RNA id TCONS_00011877
length 3211
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_006017
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27314795 ~ 27325885 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGAAAGGAGAAGCTCCACATCAATATTGTGGTTATTGGCCATGTGGATTCTGGAAAGTCCACTACGACTGGTCACCTCATCTACAAATGCGGTGGGATTGACAAAAGGACCATTGAGAAGTTTGAGAAAGAAGCTGCAGAGATGGGAAAGGGTTCCTTTAAGTATGCCTGGGTTCTGGACAAGCttaaagcagagagagagaggggaatcACAATTGACATCTCCTTGTGGAAGTTTGAGACCAGCAAATACTACGTCACCATCATTGATGCTCCAGGACACAGAGACTTCATCAAAAACATGATCACTGGAACCTCACAGGCGGATTGTGCTGTGCTGATTGTGGCGGCTGGTGTTGGGGAGTTTGAGGCTGGCATCTCGAAGAACGGCCAGACCAGAGAACACGCTCTTCTGGCTTACACACTGGGTGTGAAGCAGCTCATTGTGGGTGTCAACAAGATGGATTCCACTGAACCCAGTTACAGCCAGAAGCGTTATGAGGAAATTGTGAAGGAAGTCAGCACATACATCAAGAAGATTGGCTACAATCCTGACACTGTGGCATTTGTGCCCATCTCTGGGTGGAATGGAGACAACATGCTTGAGGCCAGTCCCAATATGAGTTGGTTCAAAGGTTGGAAGATAACCCGCAAGGAAGGTAACGCAGCCGGGACCACCCTATTGGAGGCTTTGGATGCCATTCAGCCTCCAACTCGTCCAACTGACAAACCTCTTCGCCTGCCTCTTCAGGACGTTTACAAGATTGGAGGCATCGGAACCGTTCCTGTGGGCCGTGTGGAGACTGGCCTTTTGAAGCCAGGTATGGTGGTCACCTTTGCACCAGTCAATGTGACAACTGAAGTCAAGTCTGTAGAGATGCATCATGAGGCTCTTTCTGAGGCGCTGCCCGGGGACAATGTTGGCTTCAATGTTAAGAATGTGTCCGTCAAGGACATCCGTCGTGGCAACGTTGCTGGGGACAGCAAAAATGACCCGCCGCAAGAAGCTGCCAATTTCACTGCTCAAGTGATCATCTTGAACCACCCAGGGCAGATCAGTGCTGGTTATGCCCCTGTGCTGGATTGCCACACTGCCCATATTGCCTGCAAATTCGCAGAGCTGAAAGAAAAGATCGACCGTCGTTCTGGAAAGAAGCTTGAAGACAACCCCAAGAGCTTGAAGTCTGGAGACGCGGCCATTGTGGAAATGATCCCTGGAAAGCCCATGTGTGTGGAAAGCTTCTCCGAGTATCCTCCTCTGGGTCGTTTTGCTGTGCGTGACATGCGTCAGACGGTTGCGGTGGGAGTGATTAAAGGAGTGGAGAAGAAGACCGCGACAAGCGGAAAGGTTACCAAATCTGCCCAGAAAGCCCAGAAGGCCAAATGAATGTTGTGTTTGACTGCCAACTCCAGAGACACATATGGAAAAGCAGAGGTCATTCAGCTCTTCAATCCTATTGGCTGTTTAGGTTCCATAGTCAGAGACTGCTTAATAGTTCCAATGCATCGCAAAAGtatcagaaggaaaaaaaatcaatatcaaAAGCAGTCCTTTAGATAACTCTAATTTGTATGTAAACTCATAAGTCTTCAATCCATGCATTGTTCAATAGTGTTTTAATAGTTGTGCTCTTCTTCGACGATGGCTGTCCAAACCAtatgtgatttttaaaatcttgagAGGTCTGACCTCTCCTTCTCTGGAGTGCAGTTTTAGCCTGGTTCTCACAATGTTGTCTTCGCTTGTTTTAGTGCTTGTTTGCAGAAAACCATGTGTTCAGTATCCACTGGTGGTGAGCTACTTAAAACAACACTATTTAGTAGACTTTGAGAACCTGTATGTTTAGCTTTGCAGaacaaagaaaatgtaaaaaaaaaaaaattaagctctTTATGGGCCCATTTCTGGGTTCATGCAATCTTCGGTGCACTGACAGCTTTATGTTTAGCACTTTGACTGGCGTAGGCTAACCCTGCACAAGCACTTGTTGACTTTAATTGGCATTAGCTACTGCACCTTACTCTTAAAACTAAAAGCTTTCATGTCATATTAAAGATGTCTCAACCATAATcatgttgtttgtgtttatttcacttttgaaTATGATAATGCGTAAAGATATGTACTGTATGACCACATTCAAAATTCATACAAATACTGAATGTTTTTTTCCAAAAGTTTAAGTATTTGGATTTTAAGAAGCCAATGTGTAGCCTACTTAAAACACTTTAGAGGATTAGTTTAGccaaaactgaatattctgttATTCACACTCATATTGTTCCAAACCCTGAGATATTCATTAaagatattttagaaaaaaagctCCCTCATCTTCTATAGACCGCAGCGGTCCAGAGATTAGAAAATTACAGAAAAGTAAcccaaaacattgtcaaaatattCCAAATTGTCatgcaaatctaaaaaaaatcacttaacaGCAAACAAAAACTTTGCTTACCCATGGCACATTTACTATTGCCAatatgacatgagggtgagttgTGGATACTCATCCCGAAGCCCCTAGAGACTACGCAGCGCCATTGATGCGATACAAGACCAGTGAAGAGATGATGCAAAGGTATCTATAATccaggaccaggccgtatcctgagctgatgctgtggtggtcatggatgaatggagtgcatgagactgattcctgaaagaccacgaTGACAAACAAGTCCCCGCATTGATTCTGTTGGCCAGCCTGATTAcccacacctgcagttctccatgatggacatccagcttctccagcctccagtgcctagactgcagctcctcACTGTAAGTTTGGCTAGGAGaataatggtcgtgcccaacagagcctggtttctcttaagttttttttttccccttcactttgtcaacttgtaaagtttttttcctcgccacaTTAGCCACTGGCTTGCTCAGACtgggacttgtgaagctgtgcattgatggatctcatcttcagtgtttggactctcagcagtgaaatgtAAATgagactgaactgaacttcaactctgaaatctggactttactagaactatgttaagccgctgacacaatctacattgtaaagagcgctatagaaataaacaaacatgaacaTGAGTTATTAACCTAACATTTGTGTGAAATAATCCATTAAAAATCATGTACAATTGCAGAATATTGTGTTTAGATTCTATATAAAGTTCCTAAAAAG

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8278 Predicted to enable GTPase activity and translation elongation factor activity. Acts upstream of or within heart development. Is expressed in asteriscus; brain; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including EEF1A1 (eukaryotic translation elongation factor 1 alpha 1).

Ensembl:

ensembl_id ENSDART00000164533

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011868 lncRNA upstream 84361 27216641 ~ 27232573 (+) False XLOC_006014
TCONS_00013609 lncRNA upstream 84361 27226305 ~ 27232573 (+) False XLOC_006014
TCONS_00013401 lncRNA upstream 85072 27216909 ~ 27231862 (+) False XLOC_006014
TCONS_00011869 lncRNA upstream 85526 27227224 ~ 27231408 (+) True XLOC_006014
TCONS_00013400 lncRNA upstream 507615 26802494 ~ 26809319 (+) True XLOC_006011
TCONS_00011881 lncRNA downstream 38064 27363949 ~ 27366765 (+) False XLOC_006019
TCONS_00011882 lncRNA downstream 38064 27363949 ~ 27367958 (+) False XLOC_006019
TCONS_00013610 lncRNA downstream 38395 27364280 ~ 27383511 (+) False XLOC_006019
TCONS_00011883 lncRNA downstream 43424 27369309 ~ 27383511 (+) False XLOC_006019
TCONS_00013611 lncRNA downstream 43490 27369375 ~ 27383511 (+) False XLOC_006019
TCONS_00011874 mRNA upstream 3378 27298673 ~ 27313556 (+) True XLOC_006016
TCONS_00011872 mRNA upstream 19985 27232848 ~ 27296949 (+) False XLOC_006015
TCONS_00011870 mRNA upstream 23140 27232694 ~ 27293794 (+) False XLOC_006015
TCONS_00011867 mRNA upstream 106933 27073901 ~ 27210001 (+) True XLOC_006013
TCONS_00011866 mRNA upstream 273600 27040887 ~ 27043334 (+) True XLOC_006012
TCONS_00011879 mRNA downstream 2213 27328098 ~ 27332360 (+) False XLOC_006018
TCONS_00011880 mRNA downstream 3671 27329556 ~ 27332334 (+) True XLOC_006018
TCONS_00011884 mRNA downstream 443013 27768898 ~ 27782764 (+) False XLOC_006020
TCONS_00011885 mRNA downstream 444539 27770424 ~ 27782204 (+) True XLOC_006020
TCONS_00011889 mRNA downstream 625803 27951688 ~ 28009574 (+) True XLOC_006023
TCONS_00011873 other upstream 39707 27276570 ~ 27277227 (+) True XLOC_006015
TCONS_00011871 other upstream 79357 27232797 ~ 27237577 (+) False XLOC_006015
TCONS_00011865 other upstream 544568 26704273 ~ 26772366 (+) True XLOC_006010
TCONS_00011863 other upstream 607535 26703897 ~ 26709399 (+) False XLOC_006010
TCONS_00011851 other upstream 1872411 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011887 other downstream 469245 27795130 ~ 27795209 (+) True XLOC_006022
TCONS_00011888 other downstream 478182 27804067 ~ 27804145 (+) True XLOC_006021
TCONS_00011890 other downstream 1081028 28406913 ~ 28409584 (+) False XLOC_006025
TCONS_00011891 other downstream 1081178 28407063 ~ 28410545 (+) False XLOC_006025
TCONS_00011893 other downstream 1081493 28407378 ~ 28414559 (+) True XLOC_006025

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_10939589_10944243.mRNA True 2041 mRNA 0.47 7 CI01000012 10938955 ~ 10944243 (-)