Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00011768 |
| length | 1588 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.43 |
| exon number | 9 |
| gene id | XLOC_005952 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 22863516 ~ 22873184 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043484 | regulation of RNA splicing | biological_process |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060421-3878 | Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Orthologous to human HNRNPH3 (heterogeneous nuclear ribonucleoprotein H3). |
| ensembl_id | ENSDART00000108951 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013595 | lncRNA | upstream | 22151 | 22840009 ~ 22841394 (+) | True | XLOC_005951 |
| TCONS_00013396 | lncRNA | upstream | 39671 | 22821708 ~ 22823874 (+) | False | XLOC_005950 |
| TCONS_00013594 | lncRNA | upstream | 121569 | 22737115 ~ 22741976 (+) | True | XLOC_005949 |
| TCONS_00011758 | lncRNA | upstream | 148451 | 22708475 ~ 22715094 (+) | False | XLOC_005947 |
| TCONS_00011750 | lncRNA | upstream | 249404 | 22612861 ~ 22614141 (+) | True | XLOC_005943 |
| TCONS_00011771 | lncRNA | downstream | 96244 | 22968661 ~ 22970472 (+) | True | XLOC_005953 |
| TCONS_00013596 | lncRNA | downstream | 159680 | 23032097 ~ 23046869 (+) | True | XLOC_005954 |
| TCONS_00011781 | lncRNA | downstream | 323548 | 23195965 ~ 23210974 (+) | False | XLOC_005956 |
| TCONS_00011783 | lncRNA | downstream | 355114 | 23227531 ~ 23235576 (+) | False | XLOC_005957 |
| TCONS_00011784 | lncRNA | downstream | 355114 | 23227531 ~ 23240577 (+) | True | XLOC_005957 |
| TCONS_00011765 | mRNA | upstream | 23778 | 22821708 ~ 22839767 (+) | True | XLOC_005950 |
| TCONS_00011764 | mRNA | upstream | 24223 | 22821647 ~ 22839322 (+) | False | XLOC_005950 |
| TCONS_00011760 | mRNA | upstream | 127998 | 22717366 ~ 22735547 (+) | False | XLOC_005948 |
| TCONS_00011761 | mRNA | upstream | 128001 | 22717939 ~ 22735544 (+) | False | XLOC_005948 |
| TCONS_00011763 | mRNA | upstream | 129880 | 22731356 ~ 22733665 (+) | True | XLOC_005948 |
| TCONS_00011770 | mRNA | downstream | 92451 | 22964868 ~ 22971495 (+) | False | XLOC_005953 |
| TCONS_00011772 | mRNA | downstream | 221326 | 23093743 ~ 23128977 (+) | False | XLOC_005955 |
| TCONS_00011774 | mRNA | downstream | 222811 | 23095228 ~ 23131912 (+) | False | XLOC_005955 |
| TCONS_00011773 | mRNA | downstream | 222811 | 23095228 ~ 23131912 (+) | False | XLOC_005955 |
| TCONS_00011775 | mRNA | downstream | 231717 | 23104134 ~ 23131912 (+) | True | XLOC_005955 |
| TCONS_00011748 | other | upstream | 260979 | 22555938 ~ 22602566 (+) | False | XLOC_005943 |
| TCONS_00011749 | other | upstream | 281065 | 22571943 ~ 22582480 (+) | True | XLOC_005944 |
| TCONS_00011743 | other | upstream | 313734 | 22480857 ~ 22549811 (+) | False | XLOC_005942 |
| TCONS_00011721 | other | upstream | 546389 | 22303916 ~ 22317156 (+) | False | XLOC_005940 |
| TCONS_00011713 | other | upstream | 659907 | 22203524 ~ 22203638 (+) | True | XLOC_005937 |
| TCONS_00011791 | other | downstream | 948769 | 23821186 ~ 23821300 (+) | True | XLOC_005962 |
| TCONS_00011801 | other | downstream | 1415306 | 24287723 ~ 24290238 (+) | True | XLOC_005969 |
| TCONS_00011821 | other | downstream | 1956336 | 24828753 ~ 24828869 (+) | True | XLOC_005984 |
| TCONS_00011850 | other | downstream | 2571567 | 25443984 ~ 25444370 (+) | False | XLOC_005997 |
| TCONS_00011851 | other | downstream | 2571867 | 25444284 ~ 25444523 (+) | True | XLOC_005997 |
