RNA id: TCONS_00011761


Basic Information

Item Value
RNA id TCONS_00011761
length 3338
RNA type mRNA
GC content 0.47
exon number 23
gene id XLOC_005948
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22717366 ~ 22735547 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATCACAACCCCATCATACAGCGTGTAATCACTCATCAGATCCATCTTTTTCGGTCTGACAGGAGCCCAGGTTCGGTTCGGATGATCCTGGAGAGCACAGAATGGCTGGAGCACTAAGGATGGATGATACACATTATCAAATTGGATTTGTGGTCAATGAGCCTATGACGTTTCCTTCAGCCTATGACGATCTTCCATATATGCCTGAAGCTTTTGAGGTGAAGCATGAGCCCTTTGTGCAAGAGACAGTTGATGGCCCTTACATACAGATAATTGAGGAGCCAAAGCAGAGAGGATTCAGATTTCGTTATGAATGTGAGGGCCCATCCCACGGTGGCCTACCAGGGGCCTCCAGTGAAAGGAACAGGAGGACGTATCCCACTGTCAagGTGTTAAACTTTGTGGGCAATGCTCGTGTGGAGGTTCAGCTGGTGACACACACAGACCCTCCACGAGTTCACGCACACAGCCTTGTGGGTCGACACTGTAATGAAAGCGGGGTCTGCAGTGTTGATGTCGGGCCTAGTGATTTCACAGCACAATTCAGTAACTTAGGCATCCTGCATGTCACAAAGAGAGGAGTGGTAGAAGTCTTAACGAAAAGGCTGAAAGAAGAGAAGAGGAAGGTGAAAGGGCCTGGATATAAGTTTAGTGATGCAGAGGAAAATGCTCTTATGCAAGAAGCCAAAGAGTTAGGCAAAAACATGGATCTGAACATTGTACGTTTAAAGTTCACTGCCTACCTGCAGGACAGCAATGGGAGTTACACCAGAGCATTGAAGCCTGTTGTGTCCAATCCTATATATGACAGCAAATCACCAAACGCTTCCAATCTGAAGATCTCTCGTATGGATAAAACCTCTGGGTCAGTGCTGGGAGGAGAAGAGGTCTTTCTGCTCTGTGATAAAGTTCAAAAAGATGATATTGACATCCGCTTTTATGAGGAGGAAGATGAATGGGAGGCATTAGGAGACTTTTCCCCCACTGATGTCcacaaacagtaTGCGATCGTGTTTAAGACGCCTCCGTACCGCTGCACCAACATCGATCGACCTGTCACAGTGTTTCTGCAGCTTAAGAGAAAGAAGGGCGGCGACTGTAGCGAACCAAAGCAGTTCACATATGTCCCACACAATCAAGACAAAGAAGAGGTTCAGAGGAAGAGGATGAAGGCTCTTCCAGATCATTATGGTGGCTGGCGTGGAGGACCCCAGGGTGGAGCAGGGGGGTTTGGAGGACCTGGATCTGgaacaggaggaggaggaggaatggGAGGAGGTTTCCCTTTTAATCCGATGGATAATTCAAGTTTTTTTGTTGGTGGATGTGGAGGATTTGGTGGGGGTGCACAAATGTCTGACTCCCCTCCTCAAACTGATGGAGCAAACACACAGTCTCAGTCGAACTCACAAATACGACAACAGCTCATTCAGATTGCTCTACACAATCGTGCTAATTTGGCGGCAAAATGCAATGCTCGTGCTTTATTACAGTACAGCAGCACAGGTGATGCGCGCCCCCTGCTGGCGCTGCAGAGACATCTGTGTGGAGTGCAAGATGAGAACGGAGACACGCCTCTTCACTTGGCCATTATTCACCAGAAAACTGTTGTGGCGGAACAGCTTATTAAGGCCTTGAACAGCAGCCCACAGCAGAAGTTCTTTAACAAACTCAACAAGCTCAGTCAGGCTCCTCTGCATCTGGCTGTGATCACCAAGCAACCCAAGTTAGTAGAGATGTTGATGAAATCGGGTGCAGACCCGAGTCTGCTGGACCGAGAGGGCCGGACAGTGCTTCACTTGGCCGCACATACTGGTGATGATGTCATACTAAGACTGGTCCTGAGCCTGCTAGGAGAGCATCACTCCCATTTAATAAACAGTGCTGACTTCACAGGTCAGTATCCAGTCCATCTCGCTGTGAAGAAAGATGGAGAGCGTTGTTTGCGATTGCTGGTAGAAGCAGGAGCAAAGATTAACATGCCAGAGCAGAAAAGTGGCTGCACTGCACTGCACCTGGCAGTGAGGGACAACCTGTTGAAACTGGCCTGTAATCTCATCACTGAGCTGAAGGCTGATGTGAATGCCTGTACCTACGGGGGCAACAGTCCTCTTCATTTAGCTGCCAGTCAGGGCTCTCCACATCTCTGCTCCATGCTGATCGCTGCAGGTGCTGATAAACGCATAGAGAATGACGAGCCTCTTTTCCTGAGCTCGTCTTCCTCAGATGAAGATGAAGAGAGCGAGAAGAAGCTTTCAGAAGACATGGTTCAGCAAGTTCACTGCTTGTCGATATCATCCGAGAGAGGAGTGTTTAACCCACGGAAGAGACCTGCTGCTGGACACACTCCCTTTGACCTGGCCAAATCCCAAAAGGTTAGAGATTTATTAGATGGCAGGAAAGGCCCCAAGCCCAATTCGCTCAGCCCTAAGAGGACCAAAATAAGCACAGAAGAAGTGAACCAGGATTTGGACAACGAGGTGCTGAGCAAGCTGTGTGGGATTCTAATTCATGACGATGTACCTTGGAGGGAACTGGCTGAAAAACTGGGTATGCTGACACTCACCCATCTGTACCAGGACAGCGCTTCACCCTGTCAGAAGCTTCTTGAAAGCTATCAGTTGAGTGGTGGTCCTGTGGATGGCCTGGTGGAGGCGCTGCAGGCTCTGGGTGTGAGGGAAGGAGTGAGGCTGCTGAGAGATAGTCAACCCAGAGAAGACAAACAGAGCTCAGACTCCACAGAGGACAGTGGCTTCGGCAGTCAGTCTATTGGAGAGGAGATGGCAAATCCTGCAGTGGGCAATCACTGATCATCAGTATCCATTCAATAAGGACAACTTAGCACTTTATTAGTTTACTGGTTCTTCAGGTGCAAACCGTTGGACTGTACATCATCTCAAATAGGAAATGCAGCACACCAGAGAAAGGATTAAAAAGAGCAGTTTTGAGGTCAAAATCTCTCAATGGTATTACATAACAATAAGACATGACAGGAATCGGTTGCTTTAAGATTCTCAAATCTCTGCGGTATGGAGTGAAGCTGCTTTTCTGCAGGCATTTCAGTGCTTGTATCTTATCCCCACATGAGCAACAAAACCCATCTGACTTCACGGTAATTTAACAATAATGCGACTGTCGTTTTTTAGCACAGCTGTAACCTTAACATGTTTGTAGAATGTACTGATATGAATAATTCTTGTCAGCTGTCGTTTGATATGATATGCAAACTTAAGAATATTTTCTGATACATCTAAAGACTTATGCtgtttatttatgtacatttttatgttGCAGTTGTGTGTTTCTTGGATGCAGAAATAAAtaagtttgttttatt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001525 angiogenesis biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04064 NF-kappa B signaling pathway
ko04625 C-type lectin receptor signaling pathway
ko04380 Osteoclast differentiation
ko05200 Pathways in cancer
ko05203 Viral carcinogenesis
ko05224 Breast cancer
ko05166 Human T-cell leukemia virus 1 infection
ko05169 Epstein-Barr virus infection
ko05134 Legionellosis
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-6701 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within angiogenesis and cholesterol homeostasis. Predicted to be located in cytoplasm and nucleus. Is expressed in male organism. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human NFKB2 (nuclear factor kappa B subunit 2).

Ensembl:

ensembl_id ENSDART00000188288

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011758 lncRNA upstream 2845 22708475 ~ 22715094 (+) False XLOC_005947
TCONS_00011750 lncRNA upstream 103798 22612861 ~ 22614141 (+) True XLOC_005943
TCONS_00011712 lncRNA upstream 518791 22189729 ~ 22199148 (+) True XLOC_005935
TCONS_00013593 lncRNA upstream 1024361 21687228 ~ 21693578 (+) True XLOC_005928
TCONS_00013395 lncRNA upstream 1298988 21418611 ~ 21418951 (+) True XLOC_005925
TCONS_00013594 lncRNA downstream 1571 22737115 ~ 22741976 (+) True XLOC_005949
TCONS_00013396 lncRNA downstream 86164 22821708 ~ 22823874 (+) False XLOC_005950
TCONS_00013595 lncRNA downstream 104465 22840009 ~ 22841394 (+) True XLOC_005951
TCONS_00011771 lncRNA downstream 233117 22968661 ~ 22970472 (+) True XLOC_005953
TCONS_00013596 lncRNA downstream 296553 23032097 ~ 23046869 (+) True XLOC_005954
TCONS_00011757 mRNA upstream 2837 22698215 ~ 22715102 (+) False XLOC_005947
TCONS_00011759 mRNA upstream 2841 22712406 ~ 22715098 (+) True XLOC_005947
TCONS_00011755 mRNA upstream 39837 22675802 ~ 22678102 (+) False XLOC_005946
TCONS_00011756 mRNA upstream 40163 22675853 ~ 22677776 (+) True XLOC_005946
TCONS_00011753 mRNA upstream 44773 22659232 ~ 22673166 (+) False XLOC_005945
TCONS_00011764 mRNA downstream 86103 22821647 ~ 22839322 (+) False XLOC_005950
TCONS_00011765 mRNA downstream 86164 22821708 ~ 22839767 (+) True XLOC_005950
TCONS_00011766 mRNA downstream 127972 22863516 ~ 22871948 (+) False XLOC_005952
TCONS_00011767 mRNA downstream 127972 22863516 ~ 22873184 (+) False XLOC_005952
TCONS_00011769 mRNA downstream 130132 22865676 ~ 22871964 (+) True XLOC_005952
TCONS_00011748 other upstream 115373 22555938 ~ 22602566 (+) False XLOC_005943
TCONS_00011749 other upstream 135459 22571943 ~ 22582480 (+) True XLOC_005944
TCONS_00011743 other upstream 168128 22480857 ~ 22549811 (+) False XLOC_005942
TCONS_00011721 other upstream 400783 22303916 ~ 22317156 (+) False XLOC_005940
TCONS_00011713 other upstream 514301 22203524 ~ 22203638 (+) True XLOC_005937
TCONS_00011768 other downstream 128001 22863545 ~ 22872417 (+) False XLOC_005952
TCONS_00011791 other downstream 1085642 23821186 ~ 23821300 (+) True XLOC_005962
TCONS_00011801 other downstream 1552179 24287723 ~ 24290238 (+) True XLOC_005969
TCONS_00011821 other downstream 2093209 24828753 ~ 24828869 (+) True XLOC_005984
TCONS_00011850 other downstream 2708440 25443984 ~ 25444370 (+) False XLOC_005997

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_13593620_13605408.mRNA True 3371 mRNA 0.47 23 CI01000012 13593601 ~ 13605988 (-)