XLOC_005941 (opn4a)


Basic Information

Item Value
gene id XLOC_005941
gene name opn4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22421151 ~ 22464121 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011724
AACGCTTCTCTCACCGGCTCAAAACTCCTCCGGTGCGCCGCTGTCCGTGGCCCGCGCGCTCGTGATGATGATGAGCGGAGCCGCGCACTCTGTGAGGAAGGGCATCTCGTGCCCGACACAGGACCCGAACTGCACGCGCATCGTGGAAAGCCTGTCCGCGTGGAACGACTCGGTGATGAGCGCGTACCGGCTGGTGGATTtaccccccaccaccaccactactacaTCTGTTGCTATGGTGGAAGAGTCGGTGTACCCTTTCCCAACAGTGGATGTGCCTGATCATGCCCATTACACTATTGGTGCCGTTATCCTCACCGTTGGCATTACTGGCATGCTGGGCAACTTCCTGGTCATCTATGCATTCAGCAGGAGCCGGACCCTGAGGACCCCCGCCAACTTGTTTATAATAAACCTGGCCATCACAGATTTCCTCATGTGTGCCACGCAGGCGCCCATCTTCTTCACCACCAGCATGCATAAAAGATGGATCTTTGGAGAGAAAGGTTGTGAGTTGTATGCCTTCTGTGGGGCTTTATTTGGCATCTGCTCCATGATCACGCTCATGGTTATTGCTGTGGATCGATACTTTGTGATCACGCGACCGCTGGCCTCCATCGGTGTGCTTTCTCAGAAGAGAGCTCTGCTCATCCTCCTTGTAGCCTGGGTGTATTCACTCGGCTGGAGTCTGCCACCTTTCTTTGGCTGGAGTGCTTATGTTCCCGAAGGGCTGTTGACCTCTTGTACCTGGGATTATATGACTTTCACACCCTCTGTGCGAGCTTACACTATGCTCCTCTTCATCTTCGTCTTCTTCATTCCACTCATCGTCATCATCTACTGCTATTTCTTCATTTTCCGATCCATTCGCACTACCAATGAAGCTGTGGGCAAAATTAATGGAGATAACAAACGAGACTCGATGAAACGATTCCAACGACTGAAAAATGAATGGAAGATGGCAAAAATTGCTCTTATTGTTATTCTTATGTATGTCATCTCCTGGTCTCCATACTCAACAGTGGCACTGACAGCCTTTGCTGGGTATTCTGATTTTCTCACACCATATATGAATTCAGTGCCAGCTGTGATTGCTAAAGCTTCAGCGATCCACAATCCCATAATCTACGCCATCACACACCCCAAATACAGGTTGGCTATTGCAAAGTACATCCCGTGTCTGCGTTTGCTTCTCTGTGTCCCCAAGCGTGACCTGCACTCGTTCCACAGCAGTTTAATGTCCACACGTCGCTCCACCGTCACGAGTCAGTCCTCTGATATGTCCGGACGATTCCGTAGAACCAGCACTGGCAAATCTCGACTGTCCTCCGCTTCTGATAGTGAATCTGGCTGGACCGACACTGAAGCTGATCTGTCGAGCATGAGCTCCAGGCCTGCCAGTCGACAGGTGTCCTGTGATATCAGTAAAGACACTGCGGAGATGCCAGACTTCAAACCTTGCAACTCATCCAGCTTCAAGTCCAAGCTCAAAAGCCATGACTCTGGAATCTTTGAAAAGAGCTCCTCTGATGTGGATGATGTGTCTGTGGCCGGAATCATTCAACCTGATCGCACTTTAACAAACgCTGGTGACATTACAGATGTGCCCATTTCAAGAGGTGCGATTGGTCGGATTCCCAGTATCGTCATCACCTCTGAGTCCAGCTCTCTCCTGCCCTCGGTTCGTCCCACTTACAGAATCAGCCGCTCAAACGTGTCCACTGTTGGGACAAATCCAGCCAGGAGGGACTCACGTGGTGGAGTCCAGCAGGGGGCAGCGCATCTCTCCAATGCTGCTGAAACACCTGAGTCTGGCCATATAGACAACCATCGCCCTCAGTATCTCTAGTGCTCTACTCAAGCTTTGTTTCAGGGTTCAGTGAAGTTTTCCGTGTGAGTTTTCCTGTTCTGTGATGTTGACGTATTGCAAACAGAGGGAGAGGAG

Function

symbol description
opn4a Enables photoreceptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in heart; nervous system; and testis. Orthologous to human OPN4 (opsin 4).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070111-2 Enables photoreceptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in heart; nervous system; and testis. Orthologous to human OPN4 (opsin 4).

Ensembl:

ensembl_id ENSDARG00000022098

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011724 True 1945 mRNA 0.51 11 22421151 22464121

Neighbor

gene id symbol gene type direction distance location
XLOC_005940 usp54a coding upstream 47115 22280983 ~ 22374036 (+)
XLOC_005939 myoz1a coding upstream 142736 22264914 ~ 22278415 (+)
XLOC_005938 synpo2la coding upstream 157366 22249636 ~ 22263785 (+)
XLOC_005935 camk2g2 coding upstream 177840 22119798 ~ 22243311 (+)
XLOC_005942 ldb3a coding downstream 12621 22476742 ~ 22552687 (+)
XLOC_005943 bmpr1aa coding downstream 91221 22555342 ~ 22619790 (+)
XLOC_005944 BX005174.1 coding downstream 107822 22571943 ~ 22582480 (+)
XLOC_005945 sncga coding downstream 195032 22659153 ~ 22673166 (+)
XLOC_005946 zgc:193505 coding downstream 211681 22675802 ~ 22678102 (+)
XLOC_005937 BX649385.2 non-coding upstream 217513 22203524 ~ 22203638 (+)
XLOC_005936 BX649262.1 non-coding upstream 297946 22123090 ~ 22123205 (+)
XLOC_005932 ndst2a non-coding upstream 325217 21888214 ~ 22095934 (+)
XLOC_005933 BX649358.1 non-coding upstream 370842 22050183 ~ 22050309 (+)
XLOC_005928 NA non-coding upstream 727573 21687228 ~ 21693578 (+)
XLOC_005949 NA non-coding downstream 272994 22737115 ~ 22741976 (+)
XLOC_005951 NA non-coding downstream 375888 22840009 ~ 22841394 (+)
XLOC_005954 NA non-coding downstream 567976 23032097 ~ 23046869 (+)
XLOC_005957 CR356222.1 non-coding downstream 763410 23227531 ~ 23240577 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_13747055_13764699 OPN4A coding CI01000012 null 13745924 ~ 13764699 (-)