AMCG00002100


Basic Information

Item Value
gene id AMCG00002100
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3479844 ~ 3489633 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002100
ATGGCGGCGGCCTTGGGGGATGAGGATATAGACAACGATGACTACTATTCTCTTCTGAACGTCAGGAGGGAGGCCACACAGGAGGAGCTGAAGGCATCGTACCGGCGGCTATGCATGCTCTACCACCCCGACAAGCACAGAGACCCCGAGCTGAAGAGGCAGGCCGAGCAGCTCTTCAACCTGGTGCACCAGGCCTATGAAGTGCTCAGCGATCCGCAGTCCAGGGCCATCTATGACATCTATGGGAAACGGGGGCTGGAGGTGGAAGGATGGGAGGTggtggagaggaagaggagccCCGCCGAGATCCGAGAGGAGTTCGAGCGcctgcagagggagagggacgaGCGGCGGCTGCAGCAGAGGACCAACCCCAAGGGGACAATCAGTGTGGGGGTGGACGCCACGGACCTGTTCGATCGCTACGAGGAGGATTATGAGGACCTGCCCGGAGGAGGCTTCCCTCAGATCGAGATCAACAAGATGCACATATCACAGTCCATAGAGGTACTGCCCTCTGGCCGAGCCTGCATTCCCCTACACACAGCGCCGACAGTCAGTTTACATCGAACCTTATTCTTCGTGACGACGCAGTGCGGGCTGCAGTTCTCGTCGCGTGGCGTGCGGCCGGGCCTCACCACGGTACTGGCGCGCCACTTAGACAAGAACACCATGGGCTACCTGCAGTGGCGCTGGGGCACCCAGTCCGCCATGAACACCAGTATCGTCCGCGACACCAAGACCAGTCACTTCACATTCGCGCTGCAGCTGGGGATCCCGCACTCCTTCATGATGCTCAGCTACCAGTACAAATTCCAGGACGAGGATCAGACCCGGATCAAGGGCTCCGTCAAGACGGGTTTCTTCGGCACAGTGGTGGAGTATGGCGCTGAGAGGAAGATCAGCCGGCACAGTGTTTTAGGGGCCACCGTCAGTGTCGGGGTGCCGCAGGGGGTCTCCCTCAAAATCAAGCTGAATAGGGCCAGCCAGAACTACTTCTTCCCCATCCACCTGACGGACCAGCTCCTGCCCAGCGCGGTCTTCTATGCCACGGTGCGCTTGATGCAGGAGTCGGTGCGCCGGATCATTGAGGCCGAGGAGTCCAGGATGGGCCTCATCATCCTCAACGCTTGGTACGGGAAGTTTGTGACAGACAACAGCAGGCGGCACGAGAGGGCGAAAGTCATAGATGTGACGGTTCCCCTGCAGTGTCTGGTGAAAGACTCCAAACTCATCCTCACAGAGGCCTCCAAGGCGGGCCTGCCGGGCTTCTACGACCCCTGTCTGGGGGAGGAGAAGAGCCTCAAGGTGCTGTATCAGTTCCGGGGCGTGATGCACCAGGTCCTGTCGGGCGACACCGAGGCGCTCAGGATACCAAAGCAGTGTGAGTCGCATGGGAGCCGCGTAGGAACTGTGTAG

Function

GO: NA

KEGG:

id description
K09531 DNAJC11; DnaJ homolog subfamily C member 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002100 True 1419 mRNA 0.60 12 3479844 3489633

Neighbor

gene id symbol gene type direction distance location
AMCG00002086 NA coding upstream 392551 3085012 ~ 3087293 (+)
AMCG00002087 NA coding upstream 439821 3025064 ~ 3040023 (+)
AMCG00002088 ybx1,LOC100194660,LOC107733967 coding upstream 475126 2995378 ~ 3004718 (+)
AMCG00002082 NA coding upstream 493065 2967365 ~ 2986779 (+)
AMCG00002081 LOC106572212 coding upstream 527515 2947466 ~ 2952329 (+)
AMCG00002101 klhl21 coding downstream 29682 3519315 ~ 3523845 (+)
AMCG00002099 NA coding downstream 71985 3561618 ~ 3562267 (+)
AMCG00002107 NA coding downstream 99734 3589367 ~ 3594982 (+)
AMCG00002106 NA coding downstream 117252 3606885 ~ 3618192 (+)
AMCG00002105 NA coding downstream 138818 3628451 ~ 3642159 (+)
G120794 NA non-coding upstream 363420 3113450 ~ 3116424 (+)
G120779 NA non-coding upstream 378798 3100278 ~ 3101046 (+)
G120778 NA non-coding upstream 379702 3099607 ~ 3100142 (+)
G120774 NA non-coding upstream 386945 3091794 ~ 3092899 (+)
G120763 NA non-coding upstream 433040 3043640 ~ 3046804 (+)
G120823 NA non-coding downstream 1647 3491280 ~ 3494067 (+)
G120827 NA non-coding downstream 10704 3500337 ~ 3502927 (+)
G120928 NA non-coding downstream 299083 3788716 ~ 3791941 (+)
G120961 NA non-coding downstream 450823 3940456 ~ 3940716 (+)
G120974 NA non-coding downstream 597526 4087159 ~ 4087472 (+)
G120742 NA other upstream 520369 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 625717 2852154 ~ 2854127 (+)
G120518 NA other upstream 1539028 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 2487080 682670 ~ 992764 (+)
AMCG00002098 NA other downstream 44181 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 1729197 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 3097021 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 3904167 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 5249138 8738771 ~ 8792478 (+)

Expression


Co-expression Network