AMCG00002183 (pank4,LOC106565907)


Basic Information

Item Value
gene id AMCG00002183
gene name pank4,LOC106565907
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6287217 ~ 6296247 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002183
ATGTCCCAGATTCCCCTTGGCTTTTTGTGGCGAGCGCCAAAAAGAAATGCGCACGGGTGCCACGTCGGTCACGCTGCGCTGAGCTTCCCTTCTGTGTCCTCATCTCGTGGCAGAGTGGACAAGGAGGACGAGATGTCCTGCCTCATCAAGGGCTGTAACTTCGTGCTGAAGAACATCCCCCACGAGGCGTTCGTGTACGTGAGGCACGCCGACTCCGAGTTCCGCTTCCAGAACACGCACCCGGATATCTTCCCTTACCTGCTCATCAACATCGGCTCTGGGAGGTTTGACGAACTGCTGCAGCTGGCCTCCAGGGGGCAGCACGCCAGCGTGGACATGCTGGTGAAGGATATCTATGGTGGGGCATATGGGACGCTGGGCCTGACCGGGGACCTCATCGCCAGTAGTTTTGGGAAATCAGCCACTGCGGATAAAGGCGAGTTTGTTGAGCCCGGACTCGGGACAGGGGAGGTCCAGGCCCTGTTTCTCAGACACGAAGGGTACCTGGGAGCCATTGGAGCCTTCTTAAAGGGTGCCGAGGAAGACAGTAAGTCACCGCGCCCGACTGTGTTCTCCTCTTCTTCCACCGTTCAGATCTTCAACGGTCCACATCCTAACCAGTACAGCTGGGGAGAGAATTACGCTGGGAGCTCTGGCCTGATGAGCGTCTCTCCTGAGCTGAACCCCATGCAGCGCGCCCGCAGCGGGACGttCCCCGTAATGATCAACATCATATTAAAAACACGCCGACATCTGCCCCACGCGTTCAGAGCGGAGGCCATATGCGAGGTTAATACCGGCCTTGCGATCGGGTCGGCCTCAGGAACGCGATCGCAGATGGGGCCAGGTGCTGCTCAGCGGCAGCAGAGGCCAGACTGGAGTCTCTTCCCGCTGCCTGATGCGATTTCTGCGTGGGCGTCCCCCGCGGGAGGCTGTTGGGGGAATCGGGAGGCGTTCGACATGCTGGAGATGGACCGCCTGGAGAGGCAGCTGGTCAACCTGCCCCTGCTGCAGGACCCCTCCTCGTACATCCCCGACACCATGGACCTGACGGAGGATGCCGTGGCCCGGGAGTACTGGCTCTTCTGCTTCGAGGAGGCGCTGGAGGGGGTGGTGAAGAGAGCCATCGCCAGCCAGCCAGACCTCCCGCAGACCAGAGAGCGGGCCGAGAAATTCAGCCAGAAGTACAGACACAAGCTGCAGACCCTGCGCCACCAGCCCTTTGCCTATGGATCCCTCACGGTCAGAAGTCTGCTGGACACGAGAGAACACTGTCTTAACGAGTTCAACTTCCCCGATCCCTATTCTAAGATCAAGCAGAGGGAGAATGACATGGCCCTGAAGTATTTTCAAAAGGCGGTGAAGTCTCTGGAGTCGCTGAGCTGGGAGCAGAGGCAGTTCGCCCTGGTGAAGGGTCTGCTGGCGGGGAACGTGTTCGACTGGGGGGCCAAGGCCATCTCAGAtgtcCTGGAAACCAATGCGGGTTTTGGTTTTGAAGAGGCTAAACGCAAACTGCAGGAGCGCCCCTGGCTTGTGGATTCGTATAACCAGTGGCTCGAGAGGCTAAAGGGTCCTCCTCACAAATGTGCCTTATTTTTCGTAGATAATAGTGGGATAGACATCATTCTGGGAGTGTTCCCATTTGTAAGAGAACTTCTCTGCAGGGGTACCGAGGTTGTGTTAGCCAGCAATTCTGGGCCGGCGTTAAATGACGTGACTTACAGTGAGTTACAGATATTAACGGAGAGAATCGCAGCGATGGATACAGTCATACACCGTCTGGACAAAACGCTGGCCACGGTGGTGAGAGAGAGGCACACTGACCTGGTGATCATCGAGGGCATGGGCCGCGCCATCCACACCAACTATTATGCCACCCTGCGCTGCGAGAGCCTCAAGCTGGCCGTCATCAAGAACTCCTGGCTGGCCGAGCGGCTGGGGGGCGTGCTCTTCAGCGTGGTCTTCAAATACGAGGAGCCCCCCAAGTACCAGGAAGAGACGCACCAGTAATGgacacgcacgcgcacacacgctCACACGCTCTGATTTGTCGAAGGAACGAGGTGGGGGGTTAGGAAGGGCCAGGCAAGTGTGCAAAGGACCTATTCTTTCGATTCcttttattcaggtttttgttttttaatcacgAAGGGGGAAAAGAAATGGTCTTGAGGATCTGATCATTAATAAGGGATTAGTTTAGTTTCGTTTCTCCAACGGGAAGctaaaagcaaaccaaaaaaacgATGACAGACAAAATCAACCGTGTGGATGTAGTGCAGAATTCGAGAGTGAGCGAGATTGGAGTCCTGTGCCGGCTTGCTTGGCATATGCTTTCAAAAGGGATCTTATTTTCTGCTCTTTCATCAAATACACCAAATCTGAATCAGTGTTATGGGGTTTaatttgctgctgctgttgctacAATACTGCCATTGACATCCAGTCCCGTCCAAAATCTCGCTTTTCTTTAGCTGCTGCCACGTCACGTTTTCAGGATCCATCTCAGTCCGGTCCTACGTGCGCGCTCTGTATCGGCAGTTACTCATCCAATGCGATTCCGCTTTCGCCCCGCGGTGTCTCGTTCAGAAATGCGCAGGTCGTCCTTCTATCGTTGGTCCTCCTTCTCTCGGATGATGCTTTCGTTCCTGCGTCTCGTTCCCAAGAGAGGCTTTTGAAATCTGACTGTCCTCTGTAAACATACCGTTTTTACTGGTTAACGTGCCTTCGAGCTTTCAGTAATTGATCTGATGTAAAGTGGtttcaacattttcttccagTGTGTAAAGAAAGATGAGAGAGATTATTCTTCAGTGTATGAGATGCTGAATGTTTTCATATCGGCAGGaatttttttgttctctttattGAAGTTGAATTCCTTGTATTAGTGGTTTGGGTTCAGTTTGTCCGCTTTTCCTGTGCCTGCCTGGGAAGTGGGGTTTTATGGAACTGTAGGGATTGTGAGGAGCTTTAAAAGTGACTTAGTGTCCGTAGTGCAGTCTTCGGGGGGGCACCGATTTTGCAGTCCACGTAGGGGTCTTCCCATCAAAGGAGACATTCAAACCAAAGCAGAGAAGAGCTGGTCTGGTTACCTGGTGATCTGTCATGGGTCATGGTCTTCATTGTTTAAATGAATCTAAGCATGCCCCCTCACAAGAGAACGGgatttgttcagttttcttaATGGCTGCTAGGTGCCAGTGTGTCCCTATATACATCTTCTAGTTGTAATACTTCTGGGGGGGGTTCTTTCTTCCACGCTCACAAAGGGAAAGACTCACAAAGCCATGTGTGTGTTCGTTCAATGTCAGTCTGCTCTCTTACTATCTAACAGTAGCACTTGTCTCTCcagggatttttctttttttaagtaacaaaagctaattggtGCTTCTATCTCCAAATTAAGACTGTTGAGCTCTCGTTTGTCTTTCATCTTCGTTTGCATGCGTGTTTCCAAAGTACGGTCACAGCACTTTAATCTCGGGCTCTGAAAGTCTTGATAAGCTCCACGCTGCGCGCAGGGCAGTGTTGCCTCGATCTCTCTGCCGGGTTCGCTCCGGATTCGGGGGAAGCGTCGGCCGTTCGTCGTCTTTTCAAAGCAGCGTTACAGACTTGAAATCCGAAAGGCCATGTCCGTTCCATGCGCACAGcgatgaaatgtattttttgtatcgCAGCAGTGAAGAACAAAGCTTGCATAGCACCAAGGATGTGTTTTTTCCAAATTTTGTGAGCAAAGCAATAAGATAGCATATATAAATATCGTCCGGTGGTTGGCAGAGGTTGGCAAAAGTTTGGATGGGTTTCTGTAATTTCAAAGACGACGAAATCTggtgttaaaataattttcttcaaacaaaattaataaatactggAAGTTGTCAAAAGCTTTGTTGCAACCTTTGTGCGCTCACCTAGTGAGATTCTGtataatcattatatatatatgtatatatactgtaagtgtgtacatatatatacaattcatTTCATGTATCttgagatgtttattttaagatttagtgtttgtgtaaaaataaaaaaatcagctgTTCTTTGACaatcacatgtatttaaatgtcaaatatatttttaaatgtcttcactCCA

Function

symbol description
pank4 Predicted to enable pantothenate kinase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytosol and nucleus. Orthologous to human PANK4 (pantothenate kinase 4 (inactive)).

NR:

description
PREDICTED: pantothenate kinase 4-like isoform X2

GO: NA

KEGG:

id description
K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002183 True 4116 mRNA 0.50 15 6287217 6296247

Neighbor

gene id symbol gene type direction distance location
AMCG00002184 pank4,LOC107669004,LOC107745330,LOC107742899,LOC107560420 coding upstream 1656 6284545 ~ 6285561 (+)
AMCG00002174 NA coding upstream 45138 6229136 ~ 6242079 (+)
AMCG00002176 aldh4a1,LOC106582961 coding upstream 60387 6216381 ~ 6226830 (+)
AMCG00002175 NA coding upstream 79335 6200862 ~ 6207882 (+)
AMCG00002171 LOC106565910,LOC106582958 coding upstream 113311 6171079 ~ 6173906 (+)
AMCG00002180 NA coding downstream 20039 6316286 ~ 6324559 (+)
AMCG00002181 NA coding downstream 30637 6326884 ~ 6345200 (+)
AMCG00002179 icmt,LOC107737573 coding downstream 60158 6356405 ~ 6360644 (+)
AMCG00002182 rpl22,LOC107737211,LOC107593380,LOC102779685,LOC103047485,LOC108414460 coding downstream 86808 6383055 ~ 6385782 (+)
AMCG00002186 chd5,LOC102784485 coding downstream 106663 6402910 ~ 6424263 (+)
G121402 NA non-coding upstream 9317 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 716970 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 1011294 5243709 ~ 5275923 (+)
G121187 NA non-coding upstream 1059118 5227674 ~ 5228099 (+)
G121178 dhrs3 non-coding upstream 1082603 5202849 ~ 5204614 (+)
G121417 NA non-coding downstream 30950 6327197 ~ 6327481 (+)
G121526 NA non-coding downstream 496729 6792976 ~ 6798043 (+)
G121680 NA non-coding downstream 1264819 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 1350471 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 1533560 7829807 ~ 7834211 (+)
AMCG00002152 NA other upstream 1060561 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 2745040 3533814 ~ 3542177 (+)
G120742 NA other upstream 3327742 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 3433090 2852154 ~ 2854127 (+)
G120518 NA other upstream 4346401 1924022 ~ 1940816 (+)
AMCG00002190 acot7 other downstream 290407 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 1097553 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 2442524 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 3547958 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 4271665 10567912 ~ 10604839 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003365 pank4 coding NC_007122.7 CM002895.2 15878343 ~ 15915788 (+)
grasscarp (Ctenopharyngodon idella) CI01000058_00333202_00355871 PANK4 coding CI01000058 null 333040 ~ 355875 (+)