AMCG00002287


Basic Information

Item Value
gene id AMCG00002287
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10301307 ~ 10304361 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002287
GTCGCGTCACTGAGACTGGGAAACGCAGCCCGATGCTAATTTTAGATTGCGCGCTAAAGCTCGGGGCACTGAGGACCATCCTTCACAGGAAGCTTCCGGAGTCAATTTTTGTTTATGGGGGTCTTGTACACATAATGAACAATAACCGCTGTCACCTTGAGATGTGTGTGGACTCTTGGCCCAACTTCAGTACAGTCATTTGTCGACGTCAGAAACAGGCCTTGGCAGCTTTACCCAATCTATGCACGCTGTTAACAAAGGATGTCGCCAGTATGAAGATGATGCTGATGGACGACCGAGTAATCGACTGGAAACAAGACCTGTTAATGACTGGTATTCCGAGTTGTTACGGTGGACTCTTAAAGGAAATTGGCATCAGTAATGGAATGGAAGTGAAATACTATGACTCCTTGAAGTTATTTGTCAAAAATGATCCATGGAATGTTCAATTTAAGGAGAATGACTTGGAATCCAAGATCTCCAGCCTGAATGTCTCCCATGCTGAACTGGTATACAGACAATTGAGCTACGGTGGACATGAATTAATTCAGAGCCACGTCAGGAGCTGCATCCAGAATCTCCCCAGCAGCTGCATCCTGGATGAAGAAGGCAATCCTGTCTCCTGGCTTTTGATGGATGAGTTTTATTCATTGAGAATGGGGTTTTCCATGCCCGAGTATCGCAAACATGGATATATGAAGACTGTCACGGCTACACTTATAAATGAAGCAAATTCACTTGGCTTACCAGTGTTTGGCAATGTTCACAAGACTAATGCAAAGATGATCCAACTGATGAAATGTATGGGCTTCACCCCTCACTCTGAAGAGTATGTGCATTTACTCATATCTGCTAAGTAGTCCAGAAAGCCGATCTCGCAGTTAGAGTAACTGACCTTAAGGGTCACCTTTGTCTGCAGTTAATGAGAAATCTCTGAAGTCTGTAATcacaatttttttaatgataccACAGTGACCTAAACCTAGCTTTAATCAACTGATGCTCATATCCTGATTAAAGTCCTTCCTGAATaaaatcttgtatttatttatttattttgtacaacaCTAATTCTTCCCTGGTGCATTTCCTGTCAATGTGGTTCCAGAACTTCCCACCTGATCATGTTCCTTGGAATAGATAGTCAGCCTGTATGATAAGGAATATACTGACATTATAGGACTGTTAGGTAAATGTAAAACTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002287 True 1206 mRNA 0.42 5 10301307 10304361

Neighbor

gene id symbol gene type direction distance location
AMCG00002278 clstn1 coding upstream 329642 9951006 ~ 9971665 (+)
AMCG00002273 NA coding upstream 427213 9873347 ~ 9874094 (+)
AMCG00002274 lzic,LOC107708836,LOC107586557,LOC107718820,LOC107681991,LOC107695771 coding upstream 438218 9853550 ~ 9863089 (+)
AMCG00002266 NA coding upstream 645549 9654733 ~ 9655758 (+)
AMCG00002264 tardbp,LOC107586522,LOC107716231,LOC107695779,LOC107570713,LOC107681961 coding upstream 676613 9619457 ~ 9624694 (+)
AMCG00002290 NA coding downstream 61788 10366149 ~ 10376762 (+)
AMCG00002289 NA coding downstream 80064 10384425 ~ 10392661 (+)
AMCG00002291 eno1,LOC107716106,LOC107703060,LOC107591100,LOC104965722,LOC108434336 coding downstream 95300 10399661 ~ 10425473 (+)
AMCG00002293 rere,LOC106906980,LOC104950366,LOC107687412,LOC107593365 coding downstream 152963 10457324 ~ 10541658 (+)
AMCG00002295 rere,rerea,LOC107591099 coding downstream 246306 10550667 ~ 10558464 (+)
G122198 NA non-coding upstream 169107 10079747 ~ 10132200 (+)
G122126 ctnnbip1 non-coding upstream 402427 9862956 ~ 9898880 (+)
G122119 NA non-coding upstream 470629 9829754 ~ 9830678 (+)
G122086 NA non-coding upstream 542246 9693716 ~ 9759061 (+)
G122063 NA non-coding upstream 672474 9628598 ~ 9628833 (+)
G122236 NA non-coding downstream 19168 10323529 ~ 10326651 (+)
G122328 her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146 non-coding downstream 566412 10870773 ~ 10927943 (+)
G122389 NA non-coding downstream 1030570 11334931 ~ 11348638 (+)
G122417 NA non-coding downstream 1153283 11457644 ~ 11470525 (+)
G122467 NA non-coding downstream 1217813 11522174 ~ 11522631 (+)
AMCG00002272 NA other upstream 449995 9844205 ~ 9851312 (+)
AMCG00002245 NA other upstream 1508829 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 2890077 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 3698699 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 5074651 5218830 ~ 5226656 (+)
AMCG00002294 rere other downstream 263551 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 410438 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 1053191 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 1061253 11365614 ~ 11379568 (+)
G122482 NA other downstream 1324651 11629012 ~ 11630892 (+)

Expression


Co-expression Network