AMCG00002371 (ptpn23,LOC106597002,LOC107591991)


Basic Information

Item Value
gene id AMCG00002371
gene name ptpn23,LOC106597002,LOC107591991
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12106189 ~ 12121777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002371
CTTCCTGTTAGAGTGGAAAGTGGACGACACAGGCGCAGAGGGCGCACGAATGAAAACAATAGCCATAACTCCTCACAGCACCGACCGCTACGAGTAAAAACACACGGGCAGCAAGACTCCGATCCCGGCCGCGATGGAGGCAGTGCCCCGTATGCCGATGATATGGCTGGACCTGAAGGAAGCCGGGGACTTCCAGTTCAGCCCGTCCGTCAGGCAGTTCATCCTGAAGAACTATGGGGAGAACCCGGATAACTACAATGAGCAACTGAAGAAACTGGAACAGCTCAGACAGGCAGGTGGTGGGCGGGGCCAGGAGGGTCTGGGGGGCATTTCTCTCCGATTCACAGAGACTGTATCAAGACTCATTGCAGTGCAGAGTGCGGTGAATGTGACTCGGGATTTCGAGGGCTGCAGCACCCTACGGAAATACTTCGGCCAGCTGCACTACCTGCAGAGCCGCGTGCCTCTGGGCTCTGGGCAGGAGGCATCTGTGCCCATCTCCTGGACCGAGATCTTCTCTGGAAAGACGGTTACTCACGATGATATCAGCTATGAGCAGGCCTGCATCCTTTACAATCTGGGGGCGCTGCACTCCATGCTGGGAGCCATGGACAACAGGGTGTCGGAGGAGGGAATGAAGGTCTCCTGCACCCATTTCCAGTGCTCAGCAGGGGCCTTCTCCTACCTGCGGGATCACTTCAGCCACAACTTCAGCGTGGATATGAGCCACCAGATCCTCAACCTCAACATCAACCTCATGCTGGGCCAGGCTCAAGAGTGTCTGCTGGAGAAGTCCATGCTGGACAACAGGAAGAGCTTCCTAGTGGCTCGGATCAGCGCTCAGGTGGTGGACTACTACAAGGAGGCATGCCGCGCGCTGGAGAACTCTGACACGGCCTCGCTGCTGGGCAAGATCCAGAAGGACTGGAAGAAGCTAGTGCAGATGAAGATCTACTATTTTGCGTCCATCGCACACCTGCACATGGGAAAACAGGCAGAGGAGCAGCAGAAGCACGGGGAGAGGctGGCGTACCTGCAGAGCGCCCTGGACAAGCTGACCGAAGCCGTGAAACTGGCCAAGGGTCAGCCAGACAGCGTGCAGGACGCCCTGAGGTTCACCATGGACGTCATTGGAGGAAAGTTCAACTCTGCCAAGAAAGATAACGACTTCATCTACCACGAGACTGTGCCTGCCCTGGACACGCTTCCCTCTGTCAAAGGCGCCCCACTGGTGAAAGCTCTGCCAGTGAACCCAACCGATCCCAGCGTCACTGGCCCGGACATCTTCTCCAAGCTGGTGCCAATGGCAGCACACGAGGCCTCCTCTCTCTACAGTGAGGAGAAGGCCAAGCTGCTGCGAGACATAATGACAAAGATCGACAGCAAAAATGAGGCTCTGGAGCAGTTCATGGACTCCCTGCGCCTGGACCCTGACACTGTTGACAACCTGGACACATACAGCCACATCCCGCCGGTGCTGATGGAGAAGTGTGCGGCCCTGAGTGTGCGGCCCAACACGGTCAAGAGCCTCATCCAGTCCATGCAAGtgctgtcCGGCGTGTTCACGGATGTGGAGGCCTCTCTGCGAGAGATCCGGGACGTCCTGGATGAGGAGGAGGCCCGCGAGCgccagctggaggaggccctGGGGAAGCAGGCGGCGCCGGCGCCCCACCCCGCCCTGGGAGAGCTGCGCCGCGACCTGGACAAGTACCAGGAGGTGCACGAGAAGGCCAGCTTCACCAACACCGAGCTGCACCGCGCCATGAACCTGCACATCGGCAGCCTGCGCCTGCTGAGCGGCCCGCTGGACAGCCTGCACGACGCCCTGCCCCGTCCCCAGCTCAGCGAGGagGACATGGCTGTGCTGCAGTCCATGAAGAGGATCCTGGGGAAGGTGTCAGAGATGCGGGAGCAGCGCAGCTCGCTGGAGAAGCAGCTGAGAGACCTGATCCATCAGGATGACATCACCAGCGTGCTGGTCACCACAGAGCGCGCTGACATGAAgcgGTTATTCGAGGAGCAGTTAAAGAAGTACGAGCAGGTGAAGGTGTATATTGACCAGAACCTGTCTGCCCAGGAGAATATCCTGAAGGCCCTGACTGAGGCCAACGTGCAGTACGCCACCGTGCGCAAGAGCCTGGCTGACACAGAGAGCAAGTGGAACAGCACCGTCCAGACGCTGGTCTCCTCCTACGAGGCGTATGAGGACTTAATGAAGAAGTCTCAGGAGGGGAAGGAGTTCTATGAGGACCTGGAGGCCAAGGCCTCCCGCCTGCTGGAGCGCGCCAAGACCGTGAGCCAGGCCAGGGAGGAGGAGCGGCAGCAGCTGCTGGAGAGGGAGATGCAGAAGAAGGCGCCCCCCCGGCCCACAGCCCCCAAGCCCCCGCTGCAGAAGAAGGCCTCCGACATGGACTCTGGTGCGAGTATCGAGGACCCTGAGCTGGCTCAGTTGAGTGCAGCCATCCTGGGGCTGGGGGGGGAACTGCCAGAGGAGCTCCGCAGCCTGCCCCCTGACGCCCCAATGCCCTTCTCTGGGGGGCCCCGGCCCCCTGCCCCTGAGACTTTCCTCCCAGGGAGCACAGGTGGCCCTCCTCTACACTGGCCAGCAACTGCTCTTTATGCTCAGCCCCGCTTCCCTgggcagctgcccccccccgAGGCCCTGACCAGACTGCCCCACTACCCCTCCCAGCCCTTCCCCCCTACTAGCGCAGCCCTTCCCCGGCAGGCCCCCTTTACCCCGGCAGCTATGCAGGGCCCCTCCCCCCAGCATCCCCCTGGCACCGGCTATGGCCCGCCTCCGCACTCCCAGCCCGGCGGCCCCATGCCCAGACACCCAGGCGGCCCTGTGCCCCTGCGGCCCTCCACCACCACAGTAGACAGCGTGCAGACCCCTATCCCCAGCTACACCCCCGCCCCTGGCCAGCACCCCTTCCCAGCTGCCAATGCCATGCATCCATCCCGGCCACAGATGCCCCCTGCTGGGTATGGACCGCCACCCCTAGTCGGGCAGTTCAATTCTTACCCACAGCCGCACATGCAGATGCAGCAGCCCCCGCAGCAGTACCCCCAGCCCCCCGCTCCGTTTCCCCGTGCCCTTGGGCAGCAGCAGCCGCCCTACCAGCCTGCCCTGGCCCAACACCCAGGCCAGCAGCCCCACCAGCAGTACCCACACTACCTGCCCCGGCAGCCGCTGCCTCAGCACTTCGGGCAACCCCAGCCTCACATGCACCCAGGCCTGCCCCCGCAGTCCCAGTACCAGCCTTCACAGCCTCACCTCCTGCCTGGCACTCGCCCCTCCCAGCCTCATCTCCCCCCCGTCTCCCAGCACCAACTACCCCCAGCCTCCATGCCCTCTCAACCCCAGTTAATGACTTCACATCCCTCCCAGCCACACCTGCCACCTCCCCCCTCCCATCTGTCACAGCCTCACCTCCCCCAAGGCCCGGTGCCTCGTCAGCCCCAGCTACCCTCCTCGACCCTCCCCTCAAAGCCTCACATGCTCCCTAACTGCATCCCAACACAGCCTCAGCTGCCGCCTTCCTCCCAGTCTCACCTGCCTCCTGCGTCCCAGCCTCCCATGCACATGCCCCAGCAGGCTCTACCCCCACATTCGGGGGCAATGTGTTACCCTGGGGGAGCTCCTATGTTGCCCCACCAGGCGCCTCACGTGCCCCCACAACAACAGCAGCCTCAGCCCCTGGTCCCTCAGGCCATGCCCCCAGTCgcctccacccccacctccaTGTCCTACCCTCCTGCTTCTGGTGCTGGTCTTCCTGCCGTCTCCTTACAGCACCCGGGGGCCCACCTCCCACACCCCCAGCACATCCTGCCTCCCTCCTCGGGGGCTCCTGTGTCGCAGCCCCCCAGCGTCATCCCCCCCTCGCCAGCCCCGTCACCCTCCCCTTCCCCTAGTCCCTCATCCTTGGGCCTCATCCCTCAGAGGCCTTCCCCCTCCCTGACCCCCGTGGGGGCTCACCTCCCTCCaccatcctcctcttcctcttctttggGCAGCCTGCCACCCCCCGGCTCTGCAGAGCCCCTGTTCCAGCGGCAGAGCACCAGCACTGACGACCTGTTGTCGTCCAGCCCTGAGAGCCAGCACGGGGGCCCCAAGGCCGCCGCCAACGTGCTACTGCCCACCAAAGCCGACCCGCAGGAGGGGCAGCGCAGGAGGAAGGCAGAGGGCGTGCGTCTGATCGAGGGCGACCCCTACCAAGCCCCAGAGCGCGTGTCCCACCTGTGCGCAGACCTGGAACGATTCCGAAGCATAGTGCAGGCGCTGGAGAGGCCCCTGGCAGCGGGAGGTGGGCCCTCGGAGCTGGACAACTTGTGGaaggagctgcaggagctgcaggagaagGACGCGCGGCAGCTGTCCATTGCCATCGCGCGCTGCTACAGCATGAAAAACCGGCACCAGGACATCATGCCCTACGATCGCAACCGCGTCGTGCTGCAGTCTGGCAAGGACGACTACATCAACGCCAGCTTTGTGGAGGATCTGTCACCCTACTGCCCCTGCCTCATCGCCACGCAGGCCCCGCTCACCGGCACCGCCGCCGACTTCTGGCTCATGGTCTATGAGCAGAAGGTCTCGCTGATCGTCATGCTGGTGTCTGAGGCCGAAATAGAGAAGCAAAAGGTCCTGCGGTACTTCCCGTCGGAGCGGGGCCAGCAGCTGTCCCAGGGGCCGCTCACCGTGACCCTCACCACTCAGAAGACCACCCCCACCCACGTGGAGCGCATGATTGGGCTGCAGTACCGCGACCAGAGTCTCAAACGCACCGTCATCCACCTGCAATTCACGTCTTGGCCAGAGCTgGGTCTCCCTGACAGTAAGAGCAATCTGATCCGTTTCATCCAGGAGGTCCATGGCCACTACCTGCACCAGCGCCCCCTGCACACGCCCGTCGTGGTCCACTGCAGCTCGGGGGTGGGCCGGACTGGCGCCCTCTGTCTGCTGTATGCGGcgctgcaggagctggaggcAGGGAATGGCATCCCAGACCTGCCGCTGCTGGTGAGGAGGATGAGGCAGCAGAGGAAGAACATGCTGCAAGAAAAGCTGCACCTGAAGTTCTGCTACGAAGCTGTCCTGAAGCACGCCGAGCAGGTCCTGCAGCGCCACGGCGTCCCCACCGCGCCCTGCAGCAAGAGCGCCAGCAGCACCGCCCTCAAGCCCTACTCTCGGCAGGAGTCCCAGGACATCGTTCTGGGGGGGGACATGCCCATCAGTTCTATTCAAGCCACCATCGCCAAGCTCAGCATCCGCCCCCCCTGCTCCGCTGAGGCGGGCCTAGACCCCGGCCTGGAGCCCTTTGCTGCCCAGCAAGGCTTCCCCTGTCTGGGGGGTGTGGAGTCTGGCGGCCTGCctccccagccccagccccagccggAGCCCCCTCTCTCAGCACAGCCCAGTGACCCCCTGCCCTCCTTCTCCCCTCCTCTGTCCTTCTCTCCTGTGAAGACgcactccccccccccactggaGGACAGTGCTGAGGGGCCGCACCCCTCCTCCAATCACCACTGCGACGCGCCACCCTCTGATGCCCCGAtcggctcctcctcctcctcctcgctggAGCTGCTGGCGTCCCTGACCCCCGAGGCCTTCACGCTGGACAGCAGCGCCCGGGGGAAGCCCCGCATCAGCAAGCACAGCTTCCTGCAGCCGCCCGAAGGCCAGGGCCTGCAGGGGGTGCCCTCTGAGGACGACCCCCTGAGCTCCCTCGACCCGCTCTGGACACTGAACAAGACCTGAGCCCTgcgtgcatctctctctctctgtctctctctctctatcttcaatctgtctttttctttctttctttcctcttctTCAGCATGGGACCAGTTCAGCACTGTAACCCCCAACCTGGCTGACTgcccagtgctgctgctgaaTCTACAGCCAATCCCCTCCCGCCCCCAGCAGAGCTGTCAGAGGGACCGCAGCACTGTGTCTGGGTCTCCTGAGCAAAGCGGTATGAGAGCTGCATCGCTGACCTCGTCTCCCCGTCCCCCGTAGCGTCCACTGTGCTGTGCAGAGGGTAGCAGCTATCCCAGCATGCAACGTTGCTCCAGTCACACAGCGACCTCGTGTTGTCCTGGTGCGAGTGATTCTGCGAGGGGGCTGTGTGGGTCACACAGAGAAGCATGTCTCCCCCTGCATAGAGCCGATGGAGAAGCACCCTGCAGCCACAGAGCACGAGTCCAGAGTCACTGCACCGGAGGGTGTGAGGGGAAGAGCGCTGTGCTGTCAGACTGGACACAAACCCCCGTGACTCTAAACCGCAGACTGGAGATGCAGTTTTAACTCTTCCCAGGCGGCCAGGCTGGCGTCGCTGTGAGGGGAGATGTGGCACAGAGAGCCCGGCCTGAGCTGCCCGCCGCCCACACTACAGCGGTCCGACCCGCGCGCCATCCTGTCTATGTAGAGTTGAAGCATAACCGGTAAGAAGTAGGGGCTTACATTTAGTATTCTGTTCTTAATCAGTCAGACAGAATCAGCCGATCCTAACACttcaacttttttgttgttttatttctaatatgtaaataaacttAATTAACATAA

Function

symbol description
ptpn23 Enables protein kinase binding activity and protein tyrosine phosphatase activity. Involved in several processes, including early endosome to late endosome transport; positive regulation of adherens junction organization; and positive regulation of transport. Located in ciliary basal body; early endosome; and nuclear body.

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 23 isoform X2

GO: NA

KEGG:

id description
K18040 PTPN23; tyrosine-protein phosphatase non-receptor type 23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002371 True 6595 mRNA 0.63 25 12106189 12121777

Neighbor

gene id symbol gene type direction distance location
AMCG00002372 NA coding upstream 1623 12101806 ~ 12104566 (+)
AMCG00002370 NA coding upstream 18365 12081626 ~ 12087824 (+)
AMCG00002369 pdp1 coding upstream 24607 12079963 ~ 12081582 (+)
AMCG00002365 NA coding upstream 30807 12060756 ~ 12075382 (+)
AMCG00002366 fam92a1,LOC103394454 coding upstream 54476 12046802 ~ 12051713 (+)
AMCG00002378 NA coding downstream 82244 12204021 ~ 12211319 (+)
AMCG00002379 NA coding downstream 105072 12226849 ~ 12241355 (+)
AMCG00002381 NA coding downstream 120509 12242286 ~ 12243888 (+)
AMCG00002380 NA coding downstream 122946 12244723 ~ 12246989 (+)
AMCG00002386 NA coding downstream 516709 12638486 ~ 12696128 (+)
G122737 NA non-coding upstream 666 12104670 ~ 12105523 (+)
G122592 NA non-coding upstream 248863 11856478 ~ 11857326 (+)
G122549 NA non-coding upstream 389488 11716355 ~ 11716701 (+)
G122501 NA non-coding upstream 419871 11685432 ~ 11686318 (+)
G122478 NA non-coding upstream 562568 11543104 ~ 11543621 (+)
G122743 NA non-coding downstream 6603 12128380 ~ 12129678 (+)
G122744 NA non-coding downstream 8101 12129878 ~ 12130747 (+)
G122829 NA non-coding downstream 251024 12372801 ~ 12373031 (+)
G122830 NA non-coding downstream 283165 12404942 ~ 12411141 (+)
G122868 NA non-coding downstream 930248 13052025 ~ 13052390 (+)
AMCG00002360 NA other upstream 90105 12011971 ~ 12016084 (+)
AMCG00002355 NA other upstream 207488 11894473 ~ 11898701 (+)
G122582 NA other upstream 270020 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 390817 11710450 ~ 11715372 (+)
AMCG00002331 NA other upstream 412024 11688600 ~ 11694165 (+)
G122746 NA other downstream 12009 12133786 ~ 12140465 (+)
AMCG00002390 NA other downstream 909982 13031759 ~ 13051971 (+)
AMCG00002388 NA other downstream 922916 13044693 ~ 13070832 (+)
AMCG00002393 NA other downstream 1003601 13125378 ~ 13129697 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 2205855 14327632 ~ 14361536 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010935 ptpn23a coding NC_007127.7 CM002900.2 41112346 ~ 41131578 (-)